PPT-Introduction to Linux command line for

b ioinformatics Wenjun Kang MS Jorge Andrade PhD 6282013 Bioinformatics Core Center for Research Informatics University of Chicago Goals The goal of this tutorial is to provide handson training . Linux directories. Linux system are arranged in what is called a . hierarchical directory structure. . This means that they are organized in a tree-like pattern of . directories.  (called folders in other systems), which may contain files and other directories. The first directory in the file system is called the . The shell . contains. an interpreter . an . environment of previously defined entities (e.g., variables, functions) and the results of previously executed . instructions. a command line. You are placed into a shell when you. isecur1ty training center. Presented by : Eng. Mohammad Khreesha . Table of contents. Introduction. Getting help in Linux. m. an pages. a. propos (man –k). w. hatis. . whereis. man sections. -h option. Chuck . Song 4/12/2011. Overview. Preparation. Linux Basics. Running R in Linux. Advanced skills (optional). Tools needed. Windows Users. Web browser (IE, . Firefox, safari, NOT chrome). SSH client (e.g. . Chapter . 16. Deciphering the Command Line interface. Shells. Accessing the Command-Line Interface. cmd. Accessing the Command-Line Interface in Mac OS X and Linux. terminal. The Command Prompt. C:\> username:/home. . . Wikipedia:. Red Hat Package Manager or RPM Package Manager (RPM) is a package management system. . . The . name RPM variously refers to the . .rpm . file format, files in this format, software packaged in such files, and the package manager itself. . the world of desktops. CIS 191 Spring 2012 – Guest Lecture by Philip Peng. Introduction. Different Platforms. Reasons for Linux. Cross-compiling. Case Study: . iPodLinux. Questions. 2. Lecture Outline. ~ For the . Inquisitive . Mac Sysadmin ~. Part I of ??. Who is this guy?. Sr. Application Developer @ The Wharton School, UPENN. Run, with an excellent team, a Linux (RHEL) HPC research cluster. Much of my job entails scripting (bash, . Research Computing, IS&T. p. utnam@bu.edu. What is Linux?. The Bash shell. I/O redirection (pipes, etc.). Navigating the file system. Processes and job control. Editors. Hello,world. in C. Introduction to Linux - agenda. Research Computing, IS&T. p. utnam@bu.edu. What is Linux?. The Bash shell. I/O redirection (pipes, etc.). Navigating the file system. Processes and job control. Editors. Hello,world. in C. Introduction to Linux - agenda. Azure + Open. Source . Warren. du Toit. Microsoft is now the leading open-source contributor in the world, they have just over taken Facebook and now provide the most source to communities to use and contribute. . Archiving And Backup. Prepared by Dr. Reyes, New York City College of Technology. gzip. . Command. gzip. – command used to compress one or more files. Example:. gunzip. . Command. gunzip. – command used to decompress files. Don Johnson of BU . IS&T. We’ll start with a sign in sheet that include questions about your Linux experience and goals.. We’ll end with a class evaluation.. We’ll cover as much as we can in the time allowed, starting with the easiest and most important material. Don’t feel rushed; if we don’t cover everything, you’ll pick it up as you continue working with Linux.. Work with the Linux command line interface. Set up Python tools. Coding environment. Windows based setup. Anaconda. Install python3 and pip. Command line interface (. linux. /mac terminal). Preferred systems.