PPT-Immune profiling with high-throughput sequencing

Harlan Robins 12 Cindy Desmarais 2 Chris Carlson 12 Fred Hutchinson Cancer Research Center Seattle WA 1 Adaptive TCR Technologies Seattle WA 2 For additional information about . common use in biology. ese technologies produce millions of short sequence reads and are routinely being applied to genomes, epigenomes and transcriptomes. Sequencing steady-state RNA in a sample, microlens. array. Antony Orth and Kenneth . Crozier. 8 . May. CLEO . 2012. Microscopy with lens arrays. What is high . thoughput. microscopy?. Experimental setup – . confocal. system. Lens array characteristics, resolution. Tom O’Regan. September . 2014. HIQA: Risk Profiles. Our Risk . P. rofile . tool . is . core to responsive regulation and in large part informs how the Authority responds to risk in designated . centres. :. informatics & software aspects. Gabor T. Marth. Boston College Biology . Department. BI543 Fall 2013. January 29, 2013. Traditional DNA sequencing. Genetics of living organisms. DNA. Chromosomes. Fernández-Viña. Histocompatibility, . Immunogenetics. and Disease Profiling Laboratory. Stanford Blood Center. 2. Applications of NGS in Immunogenetics. HLA Typing. KIR Typing. Blood Group Typing. Olivier Elemento, PhD. TA: Jenny Giannopoulou, PhD. Institute for Computational Biomedicine. CSHL High Throughput Data Analysis Workshop, . June 2012. Plan. 1. What high-throughput sequencing is used for. Presented by: Bryan Shaw. Background. TIL are a part of tumors and are well know to have major roles in cancer biology. TIL are vital in tumor growth, cancer progression and response to therapy.. Figure 1. Current and emerging techniques for evaluating TIL composition in solid tumors..  . Nearly . all modern DNA sequencing procedures require a concentrated amount of . single-stranded . DNA known as a . template. . A template is simply a piece of DNA of . sufficient . length and quality to allow for its sequencing (most sequencing methods . Understanding New Tools from Federal Chemical Testing Programs . Linda Birnbaum. , Ph.D., D.A.B.T., A.T.S.. Director, National Institute of Environmental Health Sciences and National Toxicology Program. A CERN . openlab. / Intel collaboration. Niko Neufeld, CERN/PH-Department. niko.neufeld@cern.ch. HTCC in a nutshell. Apply upcoming Intel technologies in an Online / Trigger & DAQ context. Application domains: L1-trigger, data acquisition and event-building, accelerator-assisted processing for high-level trigger. TexPoint fonts used in EMF: . A. A. A. A. A. A. A. A. A. A. A. A. A. A. A. A. Lecture 1. Instructor:. David Tse. dntse@stanford.edu. The Genome. …ACGTGACTGAGGACCGTG. CGACTGAGACTGACTGGGT. CTAGCTAGACTACGTTTTA. Frontend. Dan Bradley. Center for High Throughput Computing. Condor Flocking. CHTC. Condor. Pool. CS. Nuclear Eng.. Genomics. CMS Tier 2. Atlas Tier 3. Chemical Engineering. IceCube. Medical. Physics. Robert H. Vonderheide, MD, DPhil Director, Abramson Cancer Center Vice Dean, Cancer Programs, Perelman School of Medicine Vice President, Cancer Programs, University of Pennsylvania Health System May John Kenny. Centre for Genomic Research, University of Liverpool.. CGR. CGR. Experimental Design, Bioinformatics.. Library production/sequence generation:. RNA-Seq, . SAGE, . Fragment, . Mate-pair, .