PPT-ENCODE enhancers

12132013 Yao Fu Gerstein lab Supervised enhancer prediction Yip et al Genome Biology 2012 G et enhancer list away to genes DNase I FAIRE Gencode genes . Presented by:. Dan Foreman. Dan Foreman. Progress User since 1984. Author of several Progress related Publications. Progress Performance Tuning Guide. Progress Database Administration Guide. Progress VST & System Tables. www.plosbiology.org A User’s Guide to ENCODE &#x/MCI; 1 ;&#x/MCI; 1 ;AuthorSummarygoals, seven ENCODE Data Production Centers encompassing 27 institutions have been organized to focus o The Human Genome project sequenced “the human genome. ”. “the human genome” that we have labeled as such doesn’t actually . exist. What we call the human genome sequence is really just a . reference. February . 27 2013. Fundamental Goals. Improve comprehensiveness and accuracy of gene annotation. Define novel protein coding and . noncoding. gene products, including variants. Define . noncoding. regulatory elements, including both sequence and epigenetic features. Exploring transcription factor binding and the . epigenomic. landscape. Saurabh. Sinha. (several slides here are courtesy of . Lisa . Stubbs). Eukaryotic genomes . are. complex structures comprised of modified and unmodified DNA, RNA and many types of interacting proteins. interactions. Exploring transcription factor binding and the . epigenomic. landscape. Lisa Stubbs. Eukaryotic genomes . are. complex structures comprised of modified and unmodified DNA, RNA and many types of interacting proteins. interactions. Exploring transcription factor binding and the . epigenomic. landscape. Lisa Stubbs. Eukaryotic genomes . are. complex structures comprised of modified and unmodified DNA, RNA and many types of interacting proteins. The Human Genome project sequenced “the human genome. ”. “the human genome” that we have labeled as such doesn’t actually . exist. What we call the human genome sequence is really just a . reference. Presented by:. Dan Foreman. Dan Foreman. Progress User since 1984. Author of several Progress related Publications. Progress Performance Tuning Guide. Progress Database Administration Guide. Progress VST & System Tables. Dan Gilchrist. National Human Genome Research Institute. October 18, 2016. The ENCODE Project. 3D Data Access Through the ENCODE Portal. The ENCODE Encyclopedia. Tools for Investigating Genetic Variants. interactions. Exploring transcription factor binding and the . epigenomic. landscape. Lisa Stubbs. Eukaryotic genomes . are. complex structures comprised of modified and unmodified DNA, RNA and many types of interacting proteins. Zhiping Weng. U. Mass. Medical School. Simons Institute, UC Berkeley, March 10, 2016. 1. The . Enc. yclopedia . O. f . D. NA . E. lements Consortium. Goals:. Catalog all functional elements in the genome. Looking . out for the genes and each other. Sridhar Hannenhalli. Department of Cell Biology and Molecular Genetics. Center for Bioinformatics and Computational Biology. UM Institute for Advance Computer Studies. after genome . e. diting. A cautionary . tale. Lesson 12, Presentation 4. BMMB551 Genomics. Hardison. 4/26/15. 1. Genome Editing . Removal, modification, or addition of a functional element into the genome of a living cell or organism.