PPT-Clean up sequences with multiple >GI numbers when downloaded from NCBI BLAST website

Example of one sequence and the duplication clean up for phylo tree will not work gt gi565476349 refXP0062958151 hypothetical protein CARUBv10024941mg Capsella rubella gtgi482564523. Basic Local Alignment Search Tool. (Altschul et al. 1990. ). What is blast. ?. BLAST .  DNA/protein databases. GOOGLE  internet. . D. Fristrom, Boston U. .. Uses for Blast. . Identifying unknown sequence. Blast, Psi BLAST, . Perl: Arrays, Loops . J. Peter Gogarten . Office:. BPB 404. phone:. 860 486-4061, . Email:. . gogarten@uconn.edu. homology. Two sequences are homologous, if there existed an ancestral molecule in the past that is ancestral to both of the sequences. Drosophila. An introduction to web tools, databases and NCBI BLAST. Wilson Leung . 08/2016. Agenda. GEP annotation project overview. Web databases for . Drosophila. annotation. UCSC Genome Browser. Mohammed Mehdi Rizvi. Molecular Lab Techniques 446. Background. BLAST is the . B. asic . L. ocal . A. lignment . S. earch . T. ool. . It is an algorithm used for comparing sequences, such as amino acid sequences of proteins, or the nucleotides of DNA sequences.. 03/14/2017. 1. Leonardo . Mariño-Ramírez. NCBI, NIH – Bethesda, USA. NCBI Search Services and Tools. Entrez. . integrated literature and molecular databases. Viewers. BLink. . protein similarities. Thermo Fisher / Open Biosystems. Dr. Krishnan K. . Chittur. University of Alabama in Huntsville. Dr. Joseph Ng. University of Alabama in Huntsville. What is BLAST. B.L.A.S.T. stands for . B. asic . L. blastservicesncbixloaderblastdbBLASTFORMATTERMINIMALLIBSxblastformat alignformat taxon1 blastdbformatgeneinfo xformat xcleanup gbseq xobjedit eutils egquery elink epost esearch espellesummary linkout NCBI Sequence Taxonomy & BLAST Searching. Updated: June 2021. Content is made available under the Creative Commons Attribution-. NonCommercial. -No Derivatives International License. Contact (. wolbachiaproject@vanderbilt.edu. Alshahrani. CS6800. Statistical Background : HMMs.. What is DNA Sequence. . How to get DNA Sequence.. DNA Sequence formats.. Analysis methods and tools.. What is next ?. HMMs. Hidden Markov Model (. Outline. A brief introduction on various kind of BLAST. Different Sequences: introduction of NCBI and FASTA format. Web version BLAST. BLAST on Linux system. An application of BLAST on Bioengineering. An introduction to web tools, . databases, and NCBI BLAST. Wilson Leung 12/2021. Agenda. GEP annotation project overview. Web databases for . Drosophila. annotation. UCSC Genome Browser. NCBI / BLAST. Instructions. Purpose. Gene annotation of a prokaryote. Annotating a sequence means identifying the gene, the ORF, the reading frame and the probable function of the gene if it is previously unknown. online and offline. Wen-Dar Lin. Bioinformatics core, IPMB. wdlin@gate.sinica.edu.tw. Preface. When we are talking about . sequence similarity. , we usually are talking about . local alignments. .. NCBI BLAST is one of the most famous local alignment programs where almost everyone has ever used it.. Arya L, Rathinam SR, Lalitha P, Kim UR, Ghatani S, Tandon V. Trematode Fluke Procerovum varium as Cause of Ocular Inflammation in Children, South India. Emerg Infect Dis. 2016;22(2):192-200. https://doi.org/10.3201/eid2202.150051.