PPT-Mining Functional Genomics Data

ArrayExpress and Gene Expression Atlas Amy Tang PhD ArrayExpress Production Team Functional Genomics Group EMBLEBI Whats covered this morning What do we mean by functional genomics data Why do we need databases for them. analyze . your data with a mouse click. Igor Makunin. i.makunin@uq.edu.au. QAAFI, UQ, April 8, 2015. Research. Computing. Centre. @ UQ. Genomics Virtual Laboratory. Genome scale experiments are relatively cheap and very popular. Chapter 1. Kirk Scott. Iris . virginica. 2. Iris . versicolor. 3. Iris . setosa. 4. 1.1 Data Mining and Machine Learning. 5. Definition of Data Mining. The process of discovering patterns in data.. (The patterns discovered must be meaningful in that they lead to some advantage, usually an economic one.). Bioinformatics and Genomics. Applications:. Personalized cancer medicines. Disease determination . Pathway Analysis. Biomarker Discovery . An Interesting Point. “One . article estimated that the output from genomics may soon dwarf data heavyweights such as . NGS analysis. Ravi Madduri. madduri@anl.gov. Joint work with Paul . Davé. , Lukasz . Lacinski. , Alex Rodriguez, . Dinanath. . Sulakhe. , Ryan Chard and Ian Foster. Globus Genomics is developed, operated, and supported by researchers, developers, and . Iris . virginica. 2. Iris . versicolor. 3. Iris . setosa. 4. 1.1 Data Mining and Machine Learning. 5. Definition of Data Mining. The process of discovering patterns in data.. (The patterns discovered must be meaningful in that they lead to some advantage, usually an economic one.). Large. ‐scale NGS analysis using Globus Genomics . Ravi Madduri. madduri@anl.gov. Joint work with Paul . Davé. , Lukasz . Lacinski. , Alex Rodriguez, . Dinanath. . Sulakhe. and Ian Foster. Trying . Alan . Christoffels. South African Medical Research Council Bioinformatics Unit, South African National Bioinformatics Institute, University of the Western Cape, South Africa, Secretariat: Public Health Alliance for Genomic Epidemiology. Outline : Functional genomicsIntroductionRelation between genotype and phenotypeEight model organismsE. coli; yeast; ArabidopsisC. elegansDrosophilazebrafish; mouse; humanFunctional genomics using re he genomics lifecyclefrom data creation, collection, and processing to storage and access.HIPAA Choose from 180+ HIPAA-eligible services on AWS to help you store, analyze, and share genomic data in a from NHGRI’s . Planning . Workshop on the Future Opportunities . for . Genome Sequencing . & Beyond. Mark Gerstein & Rick Myers. Recommendations related to genome function. . Part 1: Workshop summary (Mark). What . is . Functional. . Genomics?. RNA . Transcription/Gene. . Expression. Measuring Gene. . Expression. Microarrays. High-throughput. . Sequencing. Transcriptional. . Regulation. Transcription. Ian Green. Clinical Engagement and Education Business Manager. Strategy. Work undertaken by Genome One (part of the . Garvan. Institute). Work underway. Completion date . –. 17. th. , March 2017. Ravi Madduri. madduri@anl.gov. Joint work with Paul . Davé. , Lukasz . Lacinski. , Alex Rodriguez, . Dinanath. . Sulakhe. , Ryan Chard and Ian Foster. Globus Genomics is developed, operated, and supported by researchers, developers, and . Bamshad Mobasher. DePaul University. 2. From Data to Wisdom. Data. The raw material of information. Information. Data organized and presented by someone. Knowledge. Information read, heard or seen and understood and integrated.