PPT-Assemblers

System Software by Leland L Beck Chapter 2 Chap 2 Role of Assembler Source Program Assembler Object Code Loader Executable Code Linker Chap 2 Chapter 2 Outline Basic Assembler Functions. Mayo/UIUC Summer . C. ourse in Computational Biology. Session Outline. Genome sequencing. Schematic overview of genome assembly. (a) DNA is collected from the biological sample and sequenced. (b) The output from the sequencer consists of many billions of short, unordered DNA fragments from random positions in the genome. (c) The short fragments are compared with each other to discover how they overlap. (d) The overlap relationships are captured in a large assembly graph shown as nodes representing . Chapter 6 (. Section 6.4 - Optional). Chapter 9 (Section 9.2). Chapter 10 (Section 10.1). Chapter 11 (Sections 11.1, 11.2) . Layered Systems. Tempus and Hora. 1000 parts in a watch. Tempus and Hora. Hora. Mayo/UIUC Summer . C. ourse in Computational Biology. Session Outline. Genome sequencing. Schematic overview of genome assembly. (a) DNA is collected from the biological sample and sequenced. (b) The output from the sequencer consists of many billions of short, unordered DNA fragments from random positions in the genome. (c) The short fragments are compared with each other to discover how they overlap. (d) The overlap relationships are captured in a large assembly graph shown as nodes representing . School of Engineering. Assembler. Reference. Abyss 1.5.1. Simpson et al., J. T., Wong, K., Jackman, S. D., Schein, J. E., Jones,. . S. J., and . Birol. , I. (2009). Abyss: a parallel assembler for. . . S. trictly linear nature forces assemblers to introduce errors:. These simple events are difficult to represented in the FASTA format. . The assembler is forced to choose, resulting in a loss of information and errors.. Hakim Weatherspoon. CS 3410, Spring 2013. Computer Science. Cornell University. See: P&H Appendix B.3-4 and 2.12. Academic Integrity. All submitted work must be your own. OK to study . together, . Hakim Weatherspoon. CS 3410, Spring 2013. Computer Science. Cornell University. See: P&H Appendix B.3-4 and 2.12. Academic Integrity. All submitted work must be your own. OK to study . together, . See: P&H . Appendix B.3-4 and 2.12. Hakim . Weatherspoon. CS 3410, Spring 2012. Computer Science. Cornell University. Goal for Today: Putting it all Together. Review Calling Convention. Compiler . See: P&H Appendix B.3-4. Hakim . Weatherspoon. CS 3410, Spring . 2012. Computer Science. Cornell University. Administrivia. Upcoming agenda. HW3 . due . today. . Tuesday, March 13. th. HW4 available by tomorrow, Wednesday March 14. Assembler: Definition. Translating source code written in assembly language to object . code.. Language Levels. High Level Language. Assembler Language. Machine Language. Micro -programming. Hardware. School of Engineering. Assembler. Reference. Abyss 1.5.1. Simpson et al., J. T., Wong, K., Jackman, S. D., Schein, J. E., Jones,. . S. J., and . Birol. , I. (2009). Abyss: a parallel assembler for. . Assemblers, Linkers, and Loaders [Weatherspoon, Bala , Bracy , and Sirer ] Hakim Weatherspoon CS 3410 Computer Science Cornell University addi x5 , x0 , 10 muli x5 , x5 , 2 addi x5 , x5 At . ResourceMFG. , manufacturing is all we do. 100% of our placements are made in a manufacturing work environment. Let us find you your next job at a top local company!. Arden Hills and Maple Grove. Mnemonic . opcode. Machine. Code. Symbolic labels  machine addresses (in memory). Some features:. Depend on assembly language . and machine language as well, may be very subtle.. Other features:.