PPT-Progress on Annotation extension relations

GO editors agreed on C16 relations QuickGO graph of relations much less flat 32 51 Progress on Annotation extension relations David OS transferred all C16 relations Wiki pages to GitHub and created new pages. Tao Huang, . Shrideep. . Pallickara. , Geoffrey Fox. Community Grids Lab. Indiana University, Bloomington. . {. taohuang. , . spallick. , . gcf}@indiana.edu. Outline. Analysis of existing Collaboration and Annotation Systems. BCB 660. October 20, 2011. From Carson Holt. Annotations. Automated. Ab. initio. (based on genomic sequence alone). Involves comparisons to known proteins (BLAST similarity). Sequence motifs such as start/stop . Triplets to Sentence Fingerprints. Motivation. . Scientific concepts are annotated with controlled vocabulary (CV) terms from ontologies such as Gene Ontology (GO) and Plant Ontology (PO). . Our Arabidopsis specific tool - . A Close Reading Strategy for Better Comprehension. Text Annotation by Teachers. What is Text Annotation?. While reading, students mark the pages for . Important information. Text meaning or key details. Authors: Joe Futrelle, Amber York. . @ Woods Hole Oceanographic Institution. Imaging FlowCytobot. (Heidi Sosik et al). HabCam. (Scott . Gallager. et al). SeaBED. (. Hanumat. Singh et al). Phytoplankton . Loralee Chevone-Garrett and Beth Dibble. ANNOTATION IS NOT. A coloring assignment. A detailed analysis. Exact or correct. Busy work. Teacher-centered. WHAT IS ANNOTATION?. RESEARCH SAYS.... A writing-to-learn strategy for use while reading and rereading.. Text Annotation by Teachers. What is Text Annotation?. While reading, students mark the pages for . Important information. Text meaning or key details. Ideas and questions. What About Highlighters?. The Next Generation. Rashmi. Prasad, Bonnie . W. ebber, . A. lan Lee. *. Aravind. Joshi. Outline. Introduction. Discourse Coherence and its annotation. PDTB Basics. PDTB enrichment. Motivation. New relations. Petra Bud. íková, FI MU. CEMI meeting, Plze. ň. , 1. 6. . . 4. . 2014. Formalization. The annotation problem is . defined by a . query image . I. . and a . vocabulary . V. of candidate concepts. (ideas for . joint journal paper). CEMI meeting, Praha, 14. 3. 2014. Outline. Introduction. Why annotations?. State-of-the-art in multimedia annotation. Search-based image annotation. What. . we. . Daniel Standage. Biology Department. Indiana University. An-no-ta-. tion. . \ˌa. -. nə. -ˈ. tā-. shən. \. A critical or explanatory note or body of notes added to a text. The act of annotating. Tao Huang, . Shrideep. . Pallickara. , Geoffrey Fox. Community Grids Lab. Indiana University, Bloomington. . {. taohuang. , . spallick. , . gcf}@indiana.edu. Outline. Analysis of existing Collaboration and Annotation Systems. Omeka. Mikhail Livshits. Install. Download . the plugin at . http://omeka.org/add-ons/plugins/image-annotation. /. Upload folder to /. omeka. /plugins. Configure. Log in to . Omeka. Admin .  Manage Plugins  Configure (next to Image Annotation. a . Tool for Online Annotation and . Curation. Dorrie Main, Taein Lee, Ping . Zheng. , Sook Jung, Stephen P. Ficklin, Jodi Humann, . Jill . Wegrzyn.  and David Neale. What is . GenSAS. ?. It is a web-based .