PPT-Developing genome

sequencing for identification detection and control of Bactrocera dorsalis Hendel and other Tephritid pests Thomas Walk Scott Geib USDAARS Pacific Basin Agricultural Research Center Hilo HI. Jeroen. . Raes. , Jan O . Korbel. , Martin J . Lercher. , Christian von . Mering. and Peer Bork. Presented by Daehwan Kim. Outline. Genome size. Genome sizes of Archaea, Bacteria, and Eukaryotes. Factors affecting genome and genome sizes . The Plot. Deepak . Purushotham. Hamid Reza . Hassanzadeh. Haozheng. . Tian. Juliette . Zerick. Lavanya. . Rishishwar. Piyush. . Ranjan. Lu Wang. The Outline. The Need & The Requirement. The Options. Shai. Carmi. Pe’er. lab, Columbia University. and. The Ashkenazi Genome Consortium (TAGC). Boston. September 2013. Outline. Ashkenazi Jewish (AJ) Genetics . and TAGC. Basic Variant Statistics. Utility in AJ Medical . From Swab to Publication. Madison I. Dunitz. 1. , David A. Coil. 1. , Jenna M. Lang. 1. , Guillaume Jospin. 1. , Aaron E. Darling. 2. , Jonathan A. Eisen. 1. UC Davis Genome Center. 1. University of California, Davis; . (as told by Michael Lynch). Genome size and complexity varies across the tree of life. Lynch 2007. Some Big Questions. What is the relationship between genomic and organismal size/complexity?. Are genome size changes adaptive, or passively acquired?. 2. Some genomics history. 1995: first bacterial genome, . Haemophilus influenza. , 1.8 Mbp, sequenced at TIGR. first use of whole-genome shotgun for a bacterium. Fleischmann et al. 1995 became most-cited paper of the year (>3000 citations). Basic Biology: DNA. Genetic information is stored in . deoxyribonucleic acid (DNA) . molecules.. A single DNA molecule is a sequence of . nucleotides. adenine (. A. ). cytosine (. C. ). guanine (. G. Active Roles in Evolution of . Immunity and Pregnancy . Retroviruses 2015. Chicago, June 8, 2015. James A. Shapiro. University of . Chicago. jsha@uchicago.edu. www.shapiro.bsd.uchicago.edu. . Evolutionary time: Genome writing . Fyodor D. Urnov, PhD. Project Leader and Senior Scientist, Sangamo BioSciences, Inc.. NAS International . Summit on Human Gene . Editing. December 3, 2015. Genome Editing . Is. In the Clinic. Fyodor D. Urnov, PhD. . John Glass. for members of the . Venter Institute Synthetic Genomics Group. The J. Craig Venter Institute, . Rockville, MD and San Diego, CA. Construction of a Bacterial Cell Containing Only Essential Genes Necessary to Impart . Uploading Your Job. Login to your RAST account. You will need to register if this is your first time using SEED technologies to work with your genome.. Click on the “Upload a new job” link.. Click here!. Genome: the total number of genes in an individual.. Human Genome- approx. 20,000 genes on the 46 human chromosomes.. Human Genome Project (HGP). Ongoing effort to completely map and sequence our genome.. Risheng. Chen et al. 2017. BMC Genomics. Oryza. sativa . Cultivated rice. Oryza. sativa . Family . Poaceae. : . grasses, corn, bamboo, wheat….. SR86. New rice cultivar domesticated from a wild strain of rice first found in 1986.. Filipa Lopes. . “Plants for Life” International PhD Program – 2017. (course “Plant Biotechnology for Sustainability and Global Economy”). . What. . is. . plant. . breeding. ?. Is the art and science of changing certain traits of plants over time in order to introduce desired characteristics.