PPT-Clustered Repeats and Regulatory Sites

Abdulrahman Alazemi Shahroze Abbas Liam Lewis Donald Ta Ann Vo Overview Clustered repeats Wide variety of functions History largely unknown Regulatory Sites A segment capable of altering expression of specific genes. @ Dennis Shasha and Philippe Bonnet, 2013 . Outline. Index . Utilization. Heap . Files. Definition: Clustered/Non clustered, Dense/Sparse. Access method: Types of queries. Constraints and Indexes. Locking. .NET Developer. Denny Cherry. mrdenny@mrdenny.com. twitter.com/. mrdenny. About Me. Author or Coauthor of 5 books. 8. + SQL Mag articles. Dozens of other articles. Microsoft MVP. Microsoft Certified Master. The concept of indexing. If you were asked to search for the name “Adam Wilbert” in a phonebook, you would go directly to the W section, and search from there alphabetically. This would be an easy task because the phonebook is indexed alphabetically.. Clustered quali�cations explained All AQF qualication types are discrete. Clustered qualications are not qualication types but a grouping of two or more AQF qualication types at either Miguel . Andrade. Faculty of Biology, . Johannes Gutenberg University . Institute of Molecular Biology. Mainz, Germany. a. ndrade@uni-mainz.de. Repeats. Frequency. 14% proteins contains . repeats. . Indexing Basics in SQL Server. Mindy Curnutt. TMW Systems, Inc.. VP, Information Management. SQL Server MVP. Twitter: @. sqlgirl. About Me. [ . 2. ]. Wife & Mother. Busy-Bee. Musician . Soap Making . Fall 2015: 197 Incompletes given. Spring 2015: 314 Incompletes given. 153 of these were converted to W. Incomplete Grade Policy. Maryland Institutions. Bowie State . F. after 6 weeks of next term. Coppin State . Two main approaches:. Cluster the reads. Link the reads. What can we do about repeats?. Two main approaches:. Cluster the reads. Link the reads. What can we do about repeats?. Two main approaches:. Cluster the reads. chromosome with a segment heavy line flanked by natural inverse-order repeats In principle inversionscan form by either intra- or interchromosomal exchanges The left side of the figure diagrams invers Fourth grade. First semester. 2018-2019. بسم الله الرحمن الرحيم. Diagnostic Medical Microbiology-Laboratory Manual. What Is a DNA Fingerprint?. Every individual carries a unique set of genes. Chromosome. 1. 2. 3. 4. 5. 6. 7. 8. 9. 10. 11. Simple repeats (micro-satellites). Low complexity repeats. DNA repeat elements (DNA). Long terminal repeat elements (LTR). Unknown. Long interspersed nuclear elements (LINE). discover. educate. advocate. Parent with HuntingtonNormal Parent Parent with HuntingtonParent with Huntington Parent with HuntingtonNormal Parent ProteinProtein10-16 repeatsTriplet RepeatGene 37-80 Dispersed repeats:. Transposable Elements. Repetitive DNA sequences. Nuclear Genome. Tandem repeats. Class II. DNA . transposons copied and moved via DNA. Class I Retrotransposons . amplifying via an RNA intermediate. Jeremy Buhler. jbuhler@wustl.edu. Parts of RepeatMasker. Programs. Smit AFA, . Hubley. R, and Green P. . “RepeatMasker-Open 4.0.” 2013-2015. . http://www.repeatmasker.org/. RMBlast. (NCBI variant), HMMER for comparisons.