PPT-Clustered Repeats and Regulatory Sites

Abdulrahman Alazemi Shahroze Abbas Liam Lewis Donald Ta Ann Vo Overview Clustered repeats Wide variety of functions History largely unknown Regulatory Sites A segment capable of altering expression of specific genes. Geobacillus. and . Heamophilious. . Phages. Ramey . Elsarrag. Introduction. Tandem repeats are adjacently repeated patterns of DNA sequences. They are associated with genetic instability and are used for forensic identification. @ Dennis Shasha and Philippe Bonnet, 2013 . Outline. Index . Utilization. Heap . Files. Definition: Clustered/Non clustered, Dense/Sparse. Access method: Types of queries. Constraints and Indexes. Locking. .NET Developer. Denny Cherry. mrdenny@mrdenny.com. twitter.com/. mrdenny. About Me. Author or Coauthor of 5 books. 8. + SQL Mag articles. Dozens of other articles. Microsoft MVP. Microsoft Certified Master. clustered regularly interspaced short palindromic repeat (CRISPR) and CRISPR associated (Cas) nucleases testis. The transgenic lacZ gene was also expressed specifically in testis. This indicates that I:. Methods to read out regulatory functions. I. dentifying . regulatory . functions in . genomes. Chr5: 133,876,119 – 134,876,119. Genes. Transcription. Regulatory elements are not easily detected by sequence analysis. Miguel . Andrade. Faculty of Biology, . Johannes Gutenberg University . Institute of Molecular Biology. Mainz, Germany. a. ndrade@uni-mainz.de. Repeats. Frequency. 14% proteins contains . repeats. . 3/26/2013. Transcriptional Regulation. Transcription . is controlled by the interaction of . tran. -acting elements called . transcription . factors . (TFs) . and . cis. -acting elements . of DNA. . Prediction . BY: William Gittens +. Sam . J. ackson. What is a Tandem Repeat?. It is a DNA pattern of two or more nucleotides. This pattern is repeated and the repetitions are directly adjacent to each other . Uses . Repeats. Frequency. 14% proteins contains . repeats. . (. Marcotte. et al, 1999). 1: Single . amino. . acid. . repeats. .. 2: . Longer. . imperfect. . tandem. . repeats. . . Assemble. in . structure. Indexing Basics in SQL Server. Mindy Curnutt. TMW Systems, Inc.. VP, Information Management. SQL Server MVP. Twitter: @. sqlgirl. About Me. [ . 2. ]. Wife & Mother. Busy-Bee. Musician . Soap Making . OBJ: TO DETERMINE WHICH SERVICES ARE AVAILABLE IN WHICH SETTLEMENTS & WHY.. RURAL SETTLEMENTS. CLUSTERED R.S.: AG BASED COMMUNITY WHERE # OF FAMILIES LIVE IN CLOSE PROXIMITY TO ONE ANOTHER. HAMLET OR VILLAGE. Miguel . Andrade. Faculty of Biology, . Johannes Gutenberg . University . Mainz, Germany. a. ndrade@uni-mainz.de. Repeats. Frequency. 14% proteins contains . repeats. . (. Marcotte. et al, 1999). 1: Single . m01Fig3Bmcrit023AlthoughthesegeneralpatternsareconsistentwiththepredictionsofYeamanandWhitlock28theeffectofthestrengthofselectionontherateofgenomeevolutionisnotaccountedforbyEqs2or4likelyinpartbe-caus Dispersed repeats:. Transposable Elements. Repetitive DNA sequences. Nuclear Genome. Tandem repeats. Class II. DNA . transposons copied and moved via DNA. Class I Retrotransposons . amplifying via an RNA intermediate.