PPT-Multithreaded FPGA Acceleration of DNA Sequence Mapping

Author : oneill | Published Date : 2024-02-09

Edward Fernandez Walid Najjar Stefano Lonardi Jason Villarreal UC Riverside Department of Computer Science and Engineering Jacquard Computing Introduction Multithreaded

Presentation Embed Code

Download Presentation

Download Presentation The PPT/PDF document "Multithreaded FPGA Acceleration of DNA S..." is the property of its rightful owner. Permission is granted to download and print the materials on this website for personal, non-commercial use only, and to display it on your personal computer provided you do not modify the materials and that you retain all copyright notices contained in the materials. By downloading content from our website, you accept the terms of this agreement.

Multithreaded FPGA Acceleration of DNA Sequence Mapping: Transcript

Edward Fernandez Walid Najjar Stefano Lonardi Jason Villarreal UC Riverside Department of Computer Science and Engineering Jacquard Computing Introduction Multithreaded architectures masks long memory latencies by context switching threads. Computing Platform. Publication:. Ra . Inta. , David J. Bowman, and Susan M. Scott. . Int. J. . Reconfig. . . Comput. . 2012, . Article . 2 (January 2012), 1 pages. . DOI=10.1155/2012/241439. . Naveen R. Iyer Kowshick . the rest of the story. http://faculty.ithaca.edu/iwoods/docs/wh. a. a. a. a. a. a. a. a. X. Today: So you have a map location. … . now what?. . Mapped Mutant Cloned Gene. Mapping:. Ultimate Goal. Site-specific restriction endonucleases are used to identify DNA molecules. What are restriction endonucleases (REs)?. How can REs be used to identify DNA molecules?. How can I find RE recognition sites in the . Tamás Herendi, S. Roland Major. UDT2012. Introduction. The presented work is . based on the algorithm by . T. Herendi . for constructing uniformly distributed linear recurring sequences to be used for pseudo-random number . Vaughn Betz. University of Toronto. With special thanks to . Mohamed . Abdelfattah. ,. Andrew . Bitar. . and Kevin Murray. Overview. Why do we need a new system-level interconnect?. Why an embedded . Chen . Zhang. 1. ，. 2. ，. 3. , . Zhenman . Fang. 2. , . Peipei . Zhou. . 2. , . Peichen . Pan. . 3. , . Jason . Cong. 1. ，. 2. ，. 3. 1 Center for Energy-Efficient Computing and Applications, Peking University, Beijing, China. P14571. Altera FPGA’s. . . Logic Elements. ALM. Registers. M20K Memory. DSP Blocks. Multipliers. PLL. . . . . . Blocks. Mbits. . . FPGA. HPS. High End. Stratix V GX. 952. 0. 1,437,000. 27/06/2016. GBT-FPGA Tutorial – 27/06/2016. 1. Schedule. 11:00 – 12:30: Introduction to the GBT-FPGA. General overview. GBT-FPGA structure. How to importing the GBT-FPGA into your project ?. 13:25 – 15:00: How to use the GBT-FPGA IP in standard mode. Itemset. Mining on FPGA Using . SDAccel. and . Vivado. HLS. Vinh Dang. *. and Kevin . Skadron. Department of Computer Science. University of Virginia, Charlottesville, VA. vqd8a@virginia.edu and skadron@virginia.edu. Gsensor. to LED. Prelab Activities:. Complete the homework given for Lab 6. Go Through the training “DE0-Nano-SoC_My_First_HPS_FPGA.pdf” from the Lab manual. Learn how to use . Qsys. tool and design system with Bridges connecting HPS and NIOS II processors. Hardison. Genomics 4_1. Sources: Webb Miller (Penn State. ). Kun-Mao Chao and . Luxin. Zhang: . Sequence Comparisons, Theory . and Methods. , Springer 2008. Bill Pearson (U. Virginia). Vladimir . Lukic. Med icago trunca t u l a h a nd boo k v e r s i o n Nov e mb er 200 6 Andrea Seres * , Gábor Deák * , Gábor Tóth * , Grégoire Aubert + , Judith Burstin + , Noel Ellis # , György B. Kiss * * A Baud, A. et al. . Rat Genome Sequencing and Mapping Consortium. Presented by Alex . Gileta. Hailing from the Palmer Lab. Nature Genetics . . 45. , . . 767–775 (2013). Genetic Variation and Complex Traits. -BFGL-NGS-109285 at . 57,589,121 . bp. . (. rs109478645; UMD 3.1 assembly) has been reported to have large effects . on . body . shape . & size. , . dystocia. , longevity, and lifetime economic .

Download Document

Here is the link to download the presentation.
"Multithreaded FPGA Acceleration of DNA Sequence Mapping"The content belongs to its owner. You may download and print it for personal use, without modification, and keep all copyright notices. By downloading, you agree to these terms.