PPT-Multithreaded FPGA Acceleration of DNA Sequence Mapping

Edward Fernandez Walid Najjar Stefano Lonardi Jason Villarreal UC Riverside Department of Computer Science and Engineering Jacquard Computing Introduction Multithreaded architectures masks long memory latencies by context switching threads. Textco BioSoftware (formerly Textco, Inc.), has been developing high quality productivity tools for molecular biologists for over 25 years. Our unwavering commitment to customer service, and our focus on quality has generated a loyal customer following. Since 1984, we have provided solutions to scientists who are breaking new ground in genetic engineering, basic biology research, drug development, and biotechnology - at academic, government, and corporate institutions in more than 50 countries worldwide. Computing Platform. Publication:. Ra . Inta. , David J. Bowman, and Susan M. Scott. . Int. J. . Reconfig. . . Comput. . 2012, . Article . 2 (January 2012), 1 pages. . DOI=10.1155/2012/241439.  . Naveen R. Iyer Kowshick . Final presentation. One semester – winter 2014/15. By : Dana Abergel and Alex . Fonariov. Supervisor : . Mony. . Orbach. High Speed Digital System Laboratory. Abstract . Matrix multiplication is a complex mathematical operation.. Charles Eric . LaForest. J. Gregory . Steffan. ECE, University of Toronto. FPGA 2012, February 24. Easier FPGA Programming. We focus on overlay architectures. Nios. , . MicroBlaze. , Vector Processors. Tamás Herendi, S. Roland Major. UDT2012. Introduction. The presented work is . based on the algorithm by . T. Herendi . for constructing uniformly distributed linear recurring sequences to be used for pseudo-random number . Seyi. . Ayorinde. Pooja. Paul . Chaudhury. FPGA. 2. Field Programmable Gate Array. Reconfigurable Circuit. Configurable Logic Blocks (CLBs). Calhoun et al.: Flexible Circuits and Architectures for Ultralow Power. Chen . Zhang. 1. ，. 2. ，. 3. , . Zhenman . Fang. 2. , . Peipei . Zhou. . 2. , . Peichen . Pan. . 3. , . Jason . Cong. 1. ，. 2. ，. 3. 1 Center for Energy-Efficient Computing and Applications, Peking University, Beijing, China. Abhinav . Podili. , Chi Zhang, Viktor . Prasanna. Ming Hsieh Department of Electrical Engineering. University of Southern California. {. podili. , zhan527, . prasanna. }@usc.edu. fpga.usc.edu. ASAP, July 2017. ASICs. Application Specific . Integrated Circuits. Microprocessors. . Microcontrollers. FPGA Principles. A Field-Programmable Gate Array (FPGA) is an integrated circuit that can be configured by the user to emulate any digital circuit as long as there are enough resources. Stream Cyphers. . Shemal Shroff. Shoaib. . Bhuria. Yash. . Naik. Peter Hall. outline. Introduction to Security. Relevance to FPGA. Design and Manufacture flow for an FPGA. Things to secure and why?. Services in C#. Salvator Galea*, Nik Sultana*, Pietro Bressana†, David Greaves*,. Robert Soulé†, Andrew W. Moore*, Noa Zilberman* . *University of Cambridge, †Università della Svizzera italiana. Paris, 2016-01-26. 2. Contents. Introduction . Brief review of ongoing IAC Adaptive Optics projects. Summary of control technologies used . Technologies comparison . C. onclusions. 3. Contents. Introduction. What are restriction endonucleases (REs)?. How can REs be used to identify DNA molecules?. How can I find RE recognition sites in the . MET. plasmids? . Restriction endonucleases are part of a bacterium’s defense against invaders. these tools may offer educators as yet unrealised and potentially complementary functions to aid The over-riding aim of all mapping tools is similar. If students can represent or manipulate a complex