PPT-Reference genome assemblies and the technology behind them

Derek M Bickhart Animal Genomics and Improvement Laboratory Research Geneticist Animal derekbickhartarsusdagov Phone 301 5048679 Fax 301 5048092 USDA disclaimer Disclaimers Mention of trade names commercial products or companies in this publication is solely for the purpose of providing specific information and does not imply recommendation or endorsement by the US Department of Agriculture over others not mentioned . Denovo genome Denovo genome outline outline novogenome from contigs from assembled contigs annotation Denovo genome Denovo genome Reads contig Gene Gene Annotation Gene Annotation Forgene School of Engineering. Assembler. Reference. Abyss 1.5.1. Simpson et al., J. T., Wong, K., Jackman, S. D., Schein, J. E., Jones,. . S. J., and . Birol. , I. (2009). Abyss: a parallel assembler for. . Shai. Carmi. Pe’er. lab, Columbia University. and. The Ashkenazi Genome Consortium (TAGC). Boston. September 2013. Outline. Ashkenazi Jewish (AJ) Genetics . and TAGC. Basic Variant Statistics. Utility in AJ Medical . I. reland: The Challenges & Opportunities Ahead. Stephen Blair. Director. Outline of Presentation. Background to Regional Reform. Outline of Government proposals for regional reorganisation. Challenges to be faced. Mathieu Benoit . Outline. Assembly process . Methodology . Results . Sensor. production . and . procurement. . : . Bumping. . at. IZM. Micron Sensor Wafer were sent to IZM for Under-Bump Metallization and assembly to Timepix and Medipix3RX ASIC. BRIM. Exome. sequencing project. Alexei Fedorov. TOPICS:. Files: . Fastq. , . sam. , bam, . vcf. , bed;. Reference Human Genome;. Transferring files (FTP, SFTP, . wget. ). Input data: “. Fastq. ” files. . Christos H. Papadimitriou. Columbia U. How does one think computationally about the Brain. ?. Good Question!. [. the way the brain works] . may be characterized by less . School of Engineering. Assembler. Reference. Abyss 1.5.1. Simpson et al., J. T., Wong, K., Jackman, S. D., Schein, J. E., Jones,. . S. J., and . Birol. , I. (2009). Abyss: a parallel assembler for. . TODAY . (. Tuesday) . . S2. . Year Head Assembly. Wednesday 6th December . S3. Year Head Assembly. Thursday 7th December . S4. Year Head Assembly. Friday 8th December . S5/6. Year Head Assembly. Job Type Full-timeAbout UsKuva Systems is commercializing a low-cost automated camera for gas detection and emissions quantification We are leading a revolution in the measurement ofmethane emissions Outline. What is a “reference genome. ?”. History and examples of . reference-building. When is a reference genome useful. ?. Reference genome assemblies: definition. Database of ordered nucleotides. for. . IRTMTC/ALD. by. IRICEN. BCM ASSEMBLIES . 1. Excavating Chain. Shovel or main link - 82 Nos.. Intermediate link - 82 Nos.. Chain finger - 5 Nos. in each shovel total 410 Nos.. Chain bolt - 2 Nos.. complexity of some plants . (very high genome sizes, repetitive element contents, polyploidy level) remains challenging.. E. xploring . intra-species variability of a region of interest . by using targeted enrichment methods is one of the strategic approaches for biodiversity analysis. This method offers precise and reliable information to link a genomic region to a trait of interest carried by a specific genotype.. “A reference genome (also known as a reference assembly) is a digital nucleic acid sequence database, assembled by scientists as a representative example of a species’ set of genes”. Public databases.