PPT-Data Analysis in Next Generation

Sequencing Paolo Aretini Senior Researcher Fondazione Pisana per la Scienza School on Scientific Data Analysis 2528 November 2019 Scuola Normale Superiore Outline Introduction. The generation data set represents the data today versus whenever the report was last run INTRODUCTION A few years back I presented a paper at NESUG on PROC COMPARE I was struck by how much time I spent preparing the data to present the data in an a Dorothy Cheung. Introduction. The problem and its . importance. Missing Pieces. Related . works in summary. Methodology. Data set. Network Generation. Network Analysis. Conclusion. Outline. The problem and its importance. David Wallom . Overview. The problem…. Other communities. The pace of technological change. Using the data. The problem…. New telescopes generate vast amounts of data. Particularly (but not limited to) surveys (SDSS, PAN-STARRS, LOFAR, SKA…). Next Generation Sequencer Applications. DeNovo Sequencing. Resequencing, Comparative Genomics. Global SNP Analysis. Gene Expression Analysis. Methylation Studies. ChIP . Sequencing-transcription factors, histones, polymerases. John Feo. Center for Adaptive Supercomputing Software. Pacific Northwest National Laboratory. October, . 2010. Graphs are everywhere in science. Astrophysics . Problem. : Outlier detection. . Challenges. Jenny . Wu. Outline. Goals : Practical guide to NGS data processing. Bioinformatics in NGS data analysis. Basics: terminology, data formats, general workflow etc.. Data Analysis Pipeline. Sequence QC and preprocessing. Jenny Wu. UCI Genomics High Throughput Facility. Outline. Goals : Practical guide to NGS data processing. Bioinformatics in NGS data analysis. Basics: terminology, data file formats, general workflow . Lab . 1. : Signal generation & analysis in Matlab. Toon . van . Waterschoot, Marc Moonen. ESAT. . – Departement of Electrical Engineering. KU Leuven, Belgium. Session 1: . Signal generation & analysis in . Add here. 10. Implications. Add here. 11. Discussion. 9. Add here . Fancy smancy title here blah blah blah blah blah blah blah blah blah blah blah blah blah blah blah. Purpose. Add here. 2. Hypotheses. Christopher Newport University. Carol Scovotti, D.P.S.. University of Wisconsin – Whitewater. Jacobs & Clevenger Case Writers’ Competition – . October . 3, 2015. Boston, Massachusetts. Here Come the Millennials!. Hardison. Genomics . 3_2. 1. 1/20/14. Second generation sequencing. Michael . Metzker. review. (2010) Nature Reviews Genetics . 11. : 31-46. 1/20/14. 2. Two generations of sequencing technology. Feature. Analysis 2015. - RNA-sequencing . Jonas Andreas . Sibbesen. & Lasse Maretty. Bioinformatics Centre, University of Copenhagen . Bioinformatics Centre. Next Generation Sequencing Analysis 2015 - RNA-seq. Assistant Professor. Department of Medicine. Division of Pulmonary Sciences & Critical Care Medicine. What I do:. Perform high-throughput data analysis for . the scientific . community; microarray and . Jean . Shimer. . and Patti . Fougere. , MA Part C. Karen Walker, WA Part . C. Karie. Taylor, AZ Part C. Abby . Winer, . DaSy. , ECTA. Tony Ruggiero, . DaSy. , . IDC. 2014 Improving Data, Improving Outcomes Conference.