PDF-Network Motifs

1 and Efficient Counting of Graphlets Yuval Shavitt School of Electrical Engineering shavittengtauacil httpwwwnetDIMESorg httpwwwengtauacilshavitt Network Motifs Why x2022 Com. Network Motifs and Modules. What is a motif?. A motif is a statistically over-represented . subgraph. in a network.. A pattern of connections that generates a characteristic dynamical response. A motif is a connection pattern template which could in principle be implemented.. Simon Andrews. simon.andrews@babraham.ac.uk. @. simon_andrews. v. 1.0. 1. Rationale. 2. Gene A. Gene B. Gene C. Hit A. Hit B. Hit C. Prom A. Prom B. Prom C. GGATCC. GGATCC. GGATCC. Basic Questions. Does the sequence around my hits look unusual?. Near-Duplicate Figures. Thanawin (Art) Rakthanmanon, . Qiang. Zhu,. Eamonn. J. Keogh. What is a near-duplicate pattern (motif)?. [20] A synopsis of the British . Diatomaceae. , 1853. [15] A history of . and Lucia . Ramirez. Loyola Marymount University . March 24, 2015. BIOL398-04: Biomathematical Modeling. Lee, T. I., Rinaldi, N. J., Robert, F., Odom, D. T., Bar-Joseph, Z., Gerber, G. K., Hannett, N. M., Harbison, C. T., Thompson, C. M., Simon, I., Zeitlinger, J., Jennings, E. G., Murray, H.L ., Gordon, D. B., Ren, B., Wyrick, J. J., Tagne, J. B., Volkert, T. L., Fraenkel, E., Gifford, D. K. & Young, R. A. (2002). Transcriptional regulatory networks in Saccharomyces cerevisiae. Science, 298(5594), 799-804. DOI: 10.1126/science.1075090. By Toni Morrison. Written in:.  New York: 1962–1965. First published in 1970. Setting:. Set in 1941 in Lorain, Ohio, Toni Morrison's novel centers on a particularly difficult year in the life of eleven year old Pecola Breedlove.  Pecola comes from a poor and poorly adjusted black family. . Classifying 19th Century Ontario Gravestones. Why is it Needed?. “Some people felt that what I was beginning to study was merely quaint, much like hand embroidered valentines. I was told the old stones had no meaning and their study had best be left to amateur antiquarians.” . Cell Networks. University of Heidelberg. Interactions . and Modules: the how and why of molecular interactions. Proteins are modular. Since the early 1970s it has been observed that protein structures are divided into discrete elements or domains that appear to fold, function and evolve independently. . Cody Dunne and Ben Shneiderman. {cdunne, ben}@. cs.umd.edu. 30. th. . Annual . Human-Computer Interaction Lab Symposium, May 22–23, 2013. College Park, . MD. Who Uses Network Analysis. Network Analysis is Hard. , . profileIndex. , . motifIndex. , . discordIndex. ] = . interactiveMatrixProfile. (data, . subLen. );. Input. data. : input time series. subLen. : subsequence length. Output. matrixProfile. : the approximated matrix profile when stopped. 590AI. Some content from . Lada. . Adamic. Vocabulary Lesson. Actor. Relational Tie. parentOf. supervisorOf. reallyHates. ( /-). …. Dyad. Person. Group. Event. …. Relation. : collection of ties of a specific type (every . simon.andrews@babraham.ac.uk. @. simon_andrews. v. 1.0. 1. Rationale. 2. Gene A. Gene B. Gene C. Hit A. Hit B. Hit C. Prom A. Prom B. Prom C. GGATCC. GGATCC. GGATCC. Basic Questions. Does the sequence around my hits look unusual?. Network motifs. Network clusters / modules. Co-clustering networks & expression. Network comparison. (species, conditions). Integration of genetic & physical nets. Network visualization. Network. Deception-trickery, concealment of one’s feelings. Honor verses Shame-humiliation, violation of social expectations. Love- Romantic and Filial (Duty to family). Gender expectations- roles of men and women. Chemical. . Modifications. Dr. Hilal AY. Protein . motifs. . and. . domains. Protein motifs are small regions of protein three-dimensional structure or amino acid sequence shared among different proteins. .