PPT-Figure Figure. Maximum-likelihood phylogenetic tree of the hemagglutinin segment of HPAI

Sobolev I Sharshov K Dubovitskiy N Kurskaya O Alekseev A Leonov S et al Highly Pathogenic Avian Influenza AH5N8 Virus Clade 2344b Western Siberia Russia 2020 Emerg Infect Dis 202127822242227 httpsdoiorg103201eid2708204969. Tools. Tara and . Pawel. Concept Map. Start with Known Sequence. Download MEGA (Molecular Evolutionary Genetics Analysis). http://www.megasoftware.net/. Use MEGA Web Browser to Find Related Sequences. 101. Eddie Holmes. Center . for Infectious Disease Dynamics,. Department of Biology,. The Pennsylvania State University. Fogarty International . Center. , National Institutes of Health. Modern . Phylogenetics. See Davison Ch. 4 for background and a more thorough discussion.. Sometimes. See last slide for copyright information. Maximum Likelihood. Sometimes. Close your eyes and differentiate?. Simulate Some Data: True α=2, β=3. 9-. 2. Type. Every variable in Java has a type. Specifically, every reference variable has two types: static type and dynamic type.. A type in Java can be one of the following:. Primitive type: . int. Haeckel’s evolutionary trees are among the first attempts at phylogeny inference.. Darwin’s tree. Schools of thought. A. Evolutionary Taxonomy. The basic view was that the best way to reconstruct the phylogeny of a group is to spend a lifetime learning everything one can about the biology of the group.. Syllabus. Lecture 01 Describing Inverse Problems. Lecture 02 Probability and Measurement Error, Part 1. Lecture 03 Probability and Measurement Error, Part 2 . Lecture 04 The L. 2. Norm and Simple Least Squares. H. ighly . P. athogenic . A. vian . I. nfluenza. –. An infection in poultry caused by any influenza A virus of the H5 and N7 subtypes. . HPAI are potentially zoonotic, though not easily transmitted to humans.. El-Shesheny R, Barman S, Feeroz MM, Hasan M, Jones-Engel L, Franks J, et al. Genesis of Influenza A(H5N8) Viruses. Emerg Infect Dis. 2017;23(8):1368-1371. https://doi.org/10.3201/eid2308.170143. Le Gal F, Gault E, Ripault M, Serpaggi J, Trinchet J, Gordien E, et al. Eighth Major Clade for Hepatitis Delta Virus. Emerg Infect Dis. 2006;12(9):1447-1450. https://doi.org/10.3201/eid1209.060112. Brown MA, Troyer JL, Pecon-Slattery J, Roelke ME, O’Brien SJ. Genetics and Pathogenesis of Feline Infectious Peritonitis Virus. Emerg Infect Dis. 2009;15(9):1445-1452. https://doi.org/10.3201/eid1509.081573. Takada N, Fujita H, Kawabata H, Takajo I, Sakata A, Takano A, et al. Spotted Fever Group Rickettsia sp. Closely Related to R. japonica, Thailand. Emerg Infect Dis. 2009;15(4):610-611. https://doi.org/10.3201/eid1504.071271. Daum LT, Canas LC, Smith CB, Klimov A, Huff W, Barnes W, et al. Genetic and Antigenic Analysis of the First A/New Caledonia/20/99-like H1N1 Influenza Isolates Reported in the Americas. Emerg Infect Dis. 2002;8(4):408-412. https://doi.org/10.3201/eid0804.010311. Pelkonen PM, Tarvainen K, Hynninen A, Kallio ER, Henttonen H, Palva A, et al. Cowpox with Severe Generalized Eruption, Finland. Emerg Infect Dis. 2003;9(11):1458-1461. https://doi.org/10.3201/eid0911.020814. Guan D, Li W, Su J, Fang L, Takeda N, Wakita T, et al. Asian Musk Shrew as a Reservoir of Rat Hepatitis E Virus, China. Emerg Infect Dis. 2013;19(8):1341-1343. https://doi.org/10.3201/eid1908.130069.