PPT-Hidden Markov Map Matching Through Noise and Sparseness

Paul Newson and John Krumm Microsoft Research ACM SIGSPATIAL 09 November 6 th 2009 Agenda Rules of the game Using a Hidden Markov Model HMM Robustness to Noise and Sparseness Shared Data for Comparison. Dr. Lawrence Kelley. Structural Bioinformatics Group. Imperial College London. SVYDAAAQLTADVKKDLRDSW. KVIGSDKKGNGVALMTTLFAD. NQETIGYFKRLGNVSQGMAND. KLRGHSITLMYALQNFIDQLD. NPDSLDLVCS. …….. Predict the 3D structure adopted by a user-supplied protein sequence. (1). Brief . review of discrete time finite Markov . Chain. Hidden Markov . Model. Examples of HMM in Bioinformatics. Estimations. Basic Local Alignment Search Tool (BLAST). The strategy. Important parameters. Van Gael, et al. ICML 2008. Presented by Daniel Johnson. Introduction. Infinite Hidden Markov Model (. iHMM. ) is . n. onparametric approach to the HMM. New inference algorithm for . iHMM. Comparison with Gibbs sampling algorithm. 15 . Section . 3 . – . 4. Hidden Markov . Models. Terminology. Marginal Probability: . Joint Probability: . Conditional Probability: .  . It get’s big!. Conditional independence. Or equivalently: . First – a . Markov Model. State. . : . sunny cloudy rainy sunny ? . A Markov Model . is a chain-structured process . where . future . states . depend . only . on . the present . state, . notes for. CSCI-GA.2590. Prof. Grishman. Markov Model . In principle each decision could depend on all the decisions which came before (the tags on all preceding words in the sentence). But we’ll make life simple by assuming that the decision depends on only the immediately preceding decision. Mark Stamp. 1. HMM. Hidden Markov Models. What is a hidden Markov model (HMM)?. A machine learning technique. A discrete hill climb technique. Where are . HMMs. used?. Speech recognition. Malware detection, IDS, etc., etc.. Lecture 9. Spoken Language Processing. Prof. Andrew Rosenberg. Markov Assumption. If we can represent all of the information available in the present state, encoding the past is un-necessary.. 1. The future is independent of the past given the present. Hidden Markov Models Teaching Demo The University of Arizona Tatjana Scheffler tatjana.scheffler@uni-potsdam.de Warm-Up: Parts of Speech Part of Speech Tagging = Grouping words into morphosyntactic types like noun, verb, etc.: Hidden Markov Models IP notice: slides from Dan Jurafsky Outline Markov Chains Hidden Markov Models Three Algorithms for HMMs The Forward Algorithm The Viterbi Algorithm The Baum-Welch (EM Algorithm) Jurafsky. Outline. Markov Chains. Hidden Markov Models. Three Algorithms for HMMs. The Forward Algorithm. The . Viterbi. Algorithm. The Baum-Welch (EM Algorithm). Applications:. The Ice Cream Task. Part of Speech Tagging. Zane Goodwin. 3/20/13. What is a Hidden Markov Model?. A . H. idden Markov Model (HMM) . is a type of unsupervised machine learning algorithm.. With respect to genome annotation, HMMs label individual nucleotides with a . for the IoT. Nirupam Roy. M-W 2:00-3:15pm. CHM 1224. CMSC 715 : Fall 2021. Lecture . 3.1: Machine Learning for IoT. Happy or sad?. Happy or sad?. Happy or sad?. Happy or sad?. Past experience. P (. The dolphin is happy. Li, Mark Drew. School of Computing Science, . Simon . Fraser University, . Vancouver. , B.C., Canada. {zza27, . li. , mark}@. cs.sfu.ca. Learning Image Similarities via Probabilistic Feature Matching.