PPT-Transcriptome analysis:

Resources and Gene Set Enrichment Analysis Genomics Lesson 83 Hardison resources 32415 2 Try it yourself Go to Gene Expression Omnibus at NCBI http wwwncbinlmnihgov geo Choose a dataset of interest eg. Meharg Institute for Global Food Security Queens University Belfast David Keir Building Malone Road Belfast BT9 5BN UK Institute of Biological and Environmental Sciences University of Aberdeen Cruickshank Building St Machar Drive Aberdeen AB24 3UU U in . collagen VI related myopathies. Muscle Study Group. September 22, 2014. R.J. . . Butterfield, MD, PhD. University . of Utah, Salt Lake City UT, . Ullrich. congenital muscular dystrophy. Bönnemann. Next Generation Sequencer Applications. DeNovo Sequencing. Resequencing, Comparative Genomics. Global SNP Analysis. Gene Expression Analysis. Methylation Studies. ChIP . Sequencing-transcription factors, histones, polymerases. QI LIU. From reads to differential expression. Raw Sequence Data. FASTQ Files. Unspliced Mapping. BWA, Bowtie. Mapped Reads. SAM/BAM Files. Expression Quantification. DEseq. , . edgeR. , etc . Functional Interpretation. Craig A. . Praul. Co- Director . Genomics Core Facility. Huck Institutes of the Life Sciences. Penn State University. A very short history of DNA sequencing. I started from the conviction that, if different DNA species exhibited . reconstruction and quantification. Lecture: algorithms & software solutions. Exercises II: de-novo assembly using . Trinity. Exercises I: read-mapping and quantification using . Cufflinks. Outline. Understanding the RNA-Seq evidence tracks on . the GEP UCSC Genome Browser. Wilson Leung. . 08/2016. Introduction to RNA-Seq. RNA-Seq: Massively parallel . RNA. . Seq. uencing using second or third generation sequencing technologies. Alisha Holloway, PhD. Gladstone Bioinformatics Core Director. What is RNA-seq?. Use of high-throughput sequencing technologies to assess the RNA content of a sample.. Why do an RNA-seq experiment?. Detect . from Ion . Torrent RNA-Seq Data. Alex Zelikovsky . Department of Computer Science. Georgia State University. Joint work with Serghei Mangul, . Sahar . Al . Seesi, Adrian . Caciula, Dumitru Brinza. , . and . Data Analysis . Roy Williams . PhD . Sanford | Burnham Medical Research Institute . Microarray Revolution. Idea. : measure the amount of. . mRNA. . to see which. . genes. . are being. . expressed. Although . genome profiling studies have demonstrated heterogeneity in subclonal architecture that may ultimately lead to relapse, a gene-expression based prediction program that can identify, distinguish and quantify drug response in subpopulations within a bulk population of myeloma cells is lacking. . Barbara Radovani. Genomics. . Master . of. Advanced . genetics. , UAB. Transcriptome. . Source. : https://www.genome.gov/13014330/transcriptome-fact-sheet/. The transcriptome, the entire repertoire of transcripts in. TexPoint fonts used in EMF: . A. A. A. A. A. A. A. A. A. A. A. A. A. A. A. A. David Tse. Stanford University. Symposium on Turbo Codes and Iterative Information Processing . Bremen, Germany. August 20, 2014. Analysis. Jessica Holmes. High Performance Biological Computing (HPCBio). Roy J. Carver Biotechnology Center. General Outline. Getting the RNA-Seq data: from RNA -> Sequence data. Experimental and practical considerations.