PPT-Codes for Correcting Tandem Repeats

Johan Chrisnata Nanyang Technological University Singapore arXiv170703956 Joint work with Yeow Meng Chee Han Mao Kiah Tuan Thanh Nguyen DNA storage the code that could save civilization. DNA profiling, short tandem repeats, DNA typing, STR, CSF1PO, FGA, TH01, TPOX, vWA, D3S1358, D5S818, D7S820, 2 TABLE 1 Tandem repeats transposon CAGCAGCAGCAGCAGCAGCAGCAGCAGCAG... Much of the sequence between its genes consists of tandem 7-nt repeats, unique (so far) amongst bacteria. Some appear to f Geobacillus. and . Heamophilious. . Phages. Ramey . Elsarrag. Introduction. Tandem repeats are adjacently repeated patterns of DNA sequences. They are associated with genetic instability and are used for forensic identification. andanygivenrealnumber afamilyoflinearcodesofrate whichcanbeencodedintimeproportionalto timestheirblocklength .Furthermore,acodewordcanberecoveredwithhighprobabilityfromaportionofitsentriesoflength(1+ . . Session . 3. .1: Repeats. . . Session . 3. .2: Biased regions. Miguel Andrade. Johannes-Gutenberg University of Mainz. A. ndrade. @uni-mainz.de. of. . PROTEIN SEQUENCE. Frequency. 14% proteins contains . Speaker. : Y.. . H. Chen. 2. Agenda. Reed-Solomon . Codes Using Algorithm for Encoder and Decoder. Decoding . Binary Quadratic Residue . Codes. 3. Reed-Solomon Codes Using Algorithm for Encoder and Decoder. Miguel . Andrade. Faculty of Biology, . Johannes Gutenberg University . Institute of Molecular Biology. Mainz, Germany. a. ndrade@uni-mainz.de. Repeats. Frequency. 14% proteins contains . repeats. . BY: William Gittens +. Sam . J. ackson. What is a Tandem Repeat?. It is a DNA pattern of two or more nucleotides. This pattern is repeated and the repetitions are directly adjacent to each other . Uses . Repeats. Frequency. 14% proteins contains . repeats. . (. Marcotte. et al, 1999). 1: Single . amino. . acid. . repeats. .. 2: . Longer. . imperfect. . tandem. . repeats. . . Assemble. in . structure. Marios. H. Michael. Matti. . Silveri. R. T. Brierley. Victor V. Albert. Philip Reinhold. Juha. . Salmilehto. Kyungjoo. Noh. Barbara M. . Terhal. S. M. . Girvin. Liang Jiang. AQIS Conference 2016. Ruud. . Pellikaan. and. Irene Márquez-Corbella. ICMETA 2016. Surakarta. , Indonesia. 6 . December. 2016. Content. 1. . Introduction on Coding, Crypto and Security. 2. . Public-key crypto systems. 3. . Miguel . Andrade. Faculty of Biology, . Johannes Gutenberg . University . Mainz, Germany. a. ndrade@uni-mainz.de. Repeats. Frequency. 14% proteins contains . repeats. . (. Marcotte. et al, 1999). 1: Single . Fourth grade. First semester. 2018-2019. بسم الله الرحمن الرحيم. Diagnostic Medical Microbiology-Laboratory Manual. What Is a DNA Fingerprint?. Every individual carries a unique set of genes. TWO TYPES OF FINGERPRINTS ARE KNOWN SO FAR !. Continued . Conventional fingerprint . of an individual comes from . finger tip . and unique for an . individual.. This . is used for identification of a person in forensic lab, police station etc. .