PPT-Genome Read In-Memory (GRIM) Filter

Fast Location Filtering in DNA Read Mapping with Emerging Memory Technologies Jeremie Kim Damla Senol Hongyi Xin Donghyuk Lee Mohammed Alser Hasan Hassan . Avg Access Time 2 Tokens Number of Controllers Average Access Time clock cyles brPage 16br Number of Tokens vs Avg Access Time 9 Controllers Number of Tokens Average Access Time clock cycles brPage 17br brPage 18br Read only memories are nonvolatile that is stored information is retained when the power is removed The main read only memory devices are listed below ROM Mask Programmable ROM also called MROMs EPROM UV Erasable and Electrically Programmable ROM OT Jeroen. . Raes. , Jan O . Korbel. , Martin J . Lercher. , Christian von . Mering. and Peer Bork. Presented by Daehwan Kim. Outline. Genome size. Genome sizes of Archaea, Bacteria, and Eukaryotes. Factors affecting genome and genome sizes . BA 445 Lesson B.8 Beneficial Grim Punishment. Sometimes when I fell like killing. someone, I do a little trick to calm myself down. I’ll go over to the person’s house and ring the doorbell. When the person comes to the door, I’m gone, but you know what I’ve left on the porch? A jack-o-lantern with a knife stuck in the side of its head with a note that says “You”. After that I usually feel better, and no harm done.. for Lazy Transactional Memory. Mark Jeffrey . and J. Gregory . Steffan. ECE, University of Toronto. November 10, 2011. Parallel Programming is Hard. Mark Jeffrey, Improving Bloom Filter Configuration for Lazy TM. Programming for Biology 2015. Madelaine Gogol. Programmer Analyst. Computational Biology Core. Stowers. Institute. Kansas City, Missouri. Outline. First, a short presentation. Introduction to IGV. Files and Formats. Fast Location Filtering in DNA Read Mapping using Emerging Memory Technologies. Jeremie. . Kim. 1,4. , . Damla Senol. 1. , Hongyi Xin. 1. , Donghyuk Lee. 1. , Mohammed Alser. 2. , Hasan . Hassan. 4,3. Fast Location Filtering in DNA Read Mapping . using Emerging Memory Technologies. Jeremie Kim. 1. , Damla Senol. 1. , Hongyi Xin. 1. , Donghyuk Lee. 1. , Mohammed Alser. 2. , Hasan Hassan. 3. , . Oguz Ergin. Sichao. Wang and Tsutomu Maruyama. University of Tsukuba, JAPAN. An FPGA Implementation of the Box Filter. We propose an implementation method of the box filter.. Exclusively designed for FPGAs with distributed and block RAMs. C and ‘our’ ASM. Example of program development. on SHARC using C and assembly . Planned for . Tuesday 7. rd. . October Afternoon. Practical examples handled in Lab 1. 1. Demo (uTTCOS) and Test (E-UNIT) configurations. Fast Location . Filtering in DNA Read Mapping . with . Emerging . Memory Technologies. Jeremie. Kim. , . Damla. . Senol. , . Hongyi. . Xin, . Donghyuk. . Lee, Mohammed . Alser. , . Hasan Hassan, . 15, 2021. dsenol@andrew.cmu.edu. . Committee: . Prof. Onur Mutlu (CMU, ETH Zurich). Prof. Saugata Ghose (CMU, UIUC). Prof. James C. Hoe (CMU). Prof. Can Alkan (Bilkent University). . https://damlasenolcali.github.io/. . Konstantinos Kanellopoulos, Joel . Lindegger. , Zulal . Bingol. , Gurpreet S. Kalsi, Ziyi Zuo, Can Firtina, Meryem Banu . Cavlak. , Jeremie S. Kim, Nika Mansouri Ghiasi, . Joël Lindegger. ETH Zürich. Spring 2023. 27 April 2023. Genome Sequencing. Genome sequencing: . Enables us to determine the order of the DNA sequence in an organism’s genome. Plays a . pivotal role .