PPT-Prediction of effective genome size in metagenomics samples

Jeroen Raes Jan O Korbel Martin J Lercher Christian von Mering and Peer Bork Presented by Daehwan Kim Outline Genome size Genome sizes of Archaea Bacteria and Eukaryotes Factors affecting genome and genome sizes . sequencing . for . identification,. detection, . and control of . Bactrocera dorsalis (. Hendel. ). and other Tephritid pests. Thomas Walk, Scott . Geib. USDA-ARS Pacific Basin Agricultural Research Center, Hilo HI. Mayo/UIUC Summer . C. ourse in Computational Biology. Session Outline. Genome sequencing. Schematic overview of genome assembly. (a) DNA is collected from the biological sample and sequenced. (b) The output from the sequencer consists of many billions of short, unordered DNA fragments from random positions in the genome. (c) The short fragments are compared with each other to discover how they overlap. (d) The overlap relationships are captured in a large assembly graph shown as nodes representing . Elad. . Hazan. (. Technion. ). Satyen Kale . (Yahoo! Labs). Shai. . Shalev-Shwartz. (Hebrew University). Three Prediction Problems: . I. Online Collaborative Filtering. Users: . {1, 2, …, m}. Movies: . Institute of Microbial Technology, Chandigarh, India. Email: . raghava@imtech.res.in. . http://crdd.osdd.net/. . http://ww.imtech.res.in/raghava/. . . Role of Informatics in Designing and Discovering Drugs/Vaccines. Presentation to AMS Board on Enterprise Communications. September 2012. ESPC Overview. Introduction. ESPC is an . interagency collaboration . between DoD (Navy, Air Force), NOAA, DoE, NASA, and NSF for coordination of research to operations for an earth system analysis and extended range prediction capability. . shinisaurus. . crocodilurus. Jian . gao. , . qiye. li, . zongji. . wang. , yang . zhou. , . paolo. . martelli. , fang li, . zijun. . xiong. , . jian. . wang. , . huanming. yang, and . guojie. . Genome: the total number of genes in an individual.. Human Genome- approx. 20,000 genes on the 46 human chromosomes.. Human Genome Project (HGP). Ongoing effort to completely map and sequence our genome.. Whole Genome Sequencing for Epidemiologists – A Brief Introduction Joel R Sevinsky , PhD Microbial genomes Common isolate identification techniques using molecular biology Whole genome sequencing (WGS) Daniel Standage. Biology Department. Indiana University. An-no-ta-. tion. . \ˌa. -. nə. -ˈ. tā-. shən. \. A critical or explanatory note or body of notes added to a text. The act of annotating. M. achine . L. earning. By: . A. bdulrhman . A. ljouie. Introduction. Metagenomics. defined by . National Human Genome Research . Institute as “the . study of . a collection . of genetic material (. Roshan. Disease risk prediction. Prediction of disease risk with genome wide association studies has yielded low accuracy for most diseases.. Family history competitive in most cases except for cancer (Do et. . Richard Gibbs and George Weinstock man Genome Sequencing Center ) genome was sequenced in a project (12). This was the third mammalian project complex collaboration led by the BCM-HGSC (BAC skims, w Hubert DENISE. hudenise@ebi.ac.uk. About me. 1997 . PhD. Molecular Parasitology. Univ. Bordeaux II, France. 1997. . -. . 2003. PostDoc. , WCMP. Univ. Glasgow, UK. 2003 – 2005 . Lecturer Molecular Biology,. Tucson High School. Biotechnology Course. Spring 2010. What do marine viruses do?. Infect and Kill. What do marine viruses do?. Transfer Genes. +. +. Ex: Photosynthesis genes!!. 10. 28. base pairs of DNA per year in world’s oceans.