PPT-Outline 1000 Genomes Project (DA)

Update and rationale Lowpass sequencing Goncalo Analysis Disease projects Sardinia T2D A public database of SNPs and detectable CNVs with allele frequency gt1 in each of multiple human population samples. 0 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 1000 120 459 405 144 136 130 129 128 122 122 89 311 54 217 95 203 153 180 167 153 144 516 485 1001 SIGMA 1000 1000 1000 1000 1000 1000 100 Ann . Lesnefsky. (Stanford University). Sarah Douglas (Harvard University). Julian . Damashek. (Stanford University). Bradley . Tolar. (University of Georgia). Hopkins Microbiology Course 2011. Comparative . Andrey Grigoriev. Director, Center for Computational and Integrative Biology. . Rutgers University. 2. What are we going to do?. Observe effects of fundamental processes. Estimate their relative contribution. OEM Tier Tier3Tier 500 1000(+500) 1000(+500) 1000(+500) 1000(+500)ExpectedDemandActualDemand Thesupplychainisadjustedtomeettheexpecteddemandof1000unitsduringthenextfourperiods. TimeExpectedDemandActua Chapter 21. You must know. How prokaryotic genomes compare to eukaryotic genomes.. Applications of bioinformatics to medicine, evolution, and health.. The activity and role of transposable elements and retrotransposons in generating genetic diversity.. Organelle gene expression processes. Organelle-to-nucleus signaling. (retrograde regulation). PCB6528 Plant Cell and Developmental Biology Spring . 2012. Organelle genomes, gene expression and signaling. Production Genomics Facility. “. User facility. providing high-throughput DNA sequencing & analysis in support of DOE missions in alternative . energy. , . carbon cycling . & . bioremediation. 2014 Workshop. G . × . E ANALYSIS. Diego . Jarquin. Chicago, IL. December 10. Variance components for common . inbreds. and hybrids. Genomes to Fields . Inbred – Pollen DAP. Inbred – Plant height. Comparative genomics of sponges, sea anemones, and multicellular pancakes. Mansi Srivastava. Rokhsar Lab, Department of Molecular and Cell Biology, UC Berkeley. Reddien Lab, Whitehead Institute for Biomedical Research. George Varghese (MSR, UCSD). ( with V. . Bafna. , C. . Kozanitis. , UCSD). Interpreting the Genome. Technology Review . 2009. New technologies will soon make it possible to sequence thousands of human genomes. Now comes the hard part: understanding all the data.. 6.1 Introduction to Genomics. 6.2 Sequencing Genomes. 6.3 Bioinformatics and Annotating Genomes. 6.1 Introduction to Genomics. Genome. Entire complement of genetic information. Includes genes, regulatory sequences, and noncoding DNA. Hardison. . Genomics 2_2. 1/7/15. 1. Y Chromosome. 3 billion bp = 3 Gb. Chr1 247 Mb. Chr12 132 Mb. Chr22 50 Mb. A human . genome (. male). The . genome. is . all the DNA. in a cell.. All the DNA on all the chromosomes. Circularly Permuted Genomes. Some phages have circularly permuted genomes. This means a linear concatamer of phage DNA is synthesized, used to fill a phage head, then cut when the head is full. Generally, one head will fit more than 100% of a genome, say, 103-110%. This ensures that wherever the DNA is cut, at least one working copy of each gene is present.. Campadelli-Fiume G, Mirandola P, Menotti L. Human Herpesvirus 6: An Emerging Pathogen. Emerg Infect Dis. 1999;5(3):353-366. https://doi.org/10.3201/eid0503.990306.