PPT-Figure Figure. Genetic relationships of Candida auris isolates based on whole-genome sequencing

Hamprecht A Barber AE Mellinghoff SC Thelen P Walther G Yu Y et al Candida auris in Germany and Previous Exposure to Foreign Healthcare Emerg Infect Dis 201925917631765 httpsdoiorg103201eid2509190262. Mayo/UIUC Summer . C. ourse in Computational Biology. Session Outline. Genome sequencing. Schematic overview of genome assembly. (a) DNA is collected from the biological sample and sequenced. (b) The output from the sequencer consists of many billions of short, unordered DNA fragments from random positions in the genome. (c) The short fragments are compared with each other to discover how they overlap. (d) The overlap relationships are captured in a large assembly graph shown as nodes representing . From Swab to Publication. Madison I. Dunitz. 1. , David A. Coil. 1. , Jenna M. Lang. 1. , Guillaume Jospin. 1. , Aaron E. Darling. 2. , Jonathan A. Eisen. 1. UC Davis Genome Center. 1. University of California, Davis; . Timetable for today. Time. Activity. 00:00. Introduction to the session. 00:10. Story cards . 00:20. Info cards. 00:30. Issue cards. 00:40. Discuss two key. issues. 00:45. Feedback your issues. What is DNA?. (very) large datasets. 5/23/17. Goals for the course. Understand how next-generation sequencing technologies are used in biomedical research. Learn how to use publicly available databases/websites to find specific information about genes. Infection Prevention and Control for . Home Healthcare and Hospice. New York State Department of Health . July . 2017. Outline. Background. Candida . auris. NYSDOH activities to help control . Candida . Illumina. genotyping arrays. BovineSNP50. 54,001 SNPs (version 1). 54,609 SNPs (version 2). BovineHD. 777,962 . SNPs. BovineLD. 6,909 SNPs. Allows for additional SNPs . (e.g.,. GeneSeek. Genomic Profiler). Infection Prevention and Control for . Emergency Medical Services. New York State Department of Health . July . 2017. Outline. Background. Candida . auris. NYSDOH activities to help control . Candida . Whole Genome Sequencing for Epidemiologists – A Brief Introduction Joel R Sevinsky , PhD Microbial genomes Common isolate identification techniques using molecular biology Whole genome sequencing (WGS) Tabletop Exercise. Background. Why . Is . C. auris . A. . P. roblem?. It causes serious infections. Antifungal resistance. Requires . disinfection with sporicidal agent. Persistent colonization . Persistence in . Johanne Ahrenfeldt . PhD Student. Overview. What is Phylogeny? . How has it been used in the past?. Advantages of WGS based phylogeny. - Vibrio . cholerae. . case. BREAK. How are we using it?. CSI phylogeny & . Kesheng Wang, PhD. Department of Biostatistics and Epidemiology. College of Public Health. East Tennessee State University. 2. Outline. Introduction . Alcohol dependence (AD). Genetic study. . Subjects and Methods. Whole genome sequencing of babies REASONS FOR USING WHOLE GENOME SEQUENCING IN BABIES There are a number of possible reasons for carrying out whole genome or exome sequencing Seeking a diagnosis for a for a rare disease Information for patients and family members Genomic Medicine Service What is your genome? Your genome is the information needed to build the human body and keep it healthy. It Research Geneticist, USDA-ARS. Sugarbeet & Potato Res Unit. Fargo, ND 58102. 03. 01. 2023. Single nucleotide polymorphism (SNP). Introduction. Widely spread in the genome. High density. Genetic diversity .