PPT-NGS Cancer Systems Biology Workshop

Variant Calling and Structural Variants from Exomes WGS Ramesh Nair May 30 2014 Outline Types of genetic variation Framework for variant discovery Variant calling methods and variant callers. Andrew Gentles. CCSB NGS workshop. September 2012. You’ve slogged through QC, trimming, alignment, realignment, variant calling. What next ?. Mutational processes molding the genomes of 21 breast cancers/The life history of 21 breast cancers. Domitilla. Del . Vecchio. Department of Mechanical Engineering. MIT. May 24. th. . 2011, . Sontagfest. 1. Molecular Systems Biology . and Eduardo. 2. CDC 2005 Tutorial Session an EJC 2005: Molecular Systems Biology and Control. Cancer Informatics (omics). David Boone. Outline. What is cancer and how is it different from other diseases?. Major players in tumor initiation (Understand one before many) . Oncogenes. Tumor suppressors. Eric T. Weimer, Ph.D., D(ABMLI). Assistant Professor, Pathology and Laboratory Medicine. Associate Director, Clinical Flow Cytometry, HLA, and Immunology . Laboratories. CONFLICT OF . INTEREST. I . have financial relationship(s) with: . Emerging Clinical Applications. Mahmood rasheed. Hematology/oncology fellow. VCU Massey Cancer Center. Extracellular Vesicles. Heterogenous range of particles shed from virtually all cells in the human body.. Summary/Conclusions and Recommendations – Day 3. From RERF LSS: . Excess relative risk goes down with age of exposure.. Excess absolute risk goes up with age, as the baseline goes up.. Excess risk seem to linearly related to the dose of radiation . Clinical Implementation in CLIA/CAP facility. Shashikant Kulkarni, M.S (Medicine)., Ph.D., FACMG. Associate Professor of Pediatrics, Genetics, Pathology and Immunology. Medical Director of Genomics and Pathology Services. Departiment. of Diagnostics and Laboratory Medicine. A. . Gemelli. – School of Medicine, Rome. Next. generation . techniques. for . biomarker. . identification. I. ssues regarding . BRCA1/2. Sanger . Domitilla. Del . Vecchio. Department of Mechanical Engineering. MIT. May 24. th. . 2011, . Sontagfest. 1. Molecular Systems Biology . and Eduardo. 2. CDC 2005 Tutorial Session an EJC 2005: Molecular Systems Biology and Control. Sylvia Plevritis, PhD. Course Director. Melissa . Ko. Teaching Assistant. Fuad. . Nijim. CCSB Program Manager. March 31, 2014. Goals of CBIO243. Introduce major principles of cancer systems biology that integrate experimental and computational biology.. -- A Whirlwind tour. Presented by Daniel Winester, Geodesist, NGS Gravimetry Representative to the Geophysics Committee of U.S. National Section of PAIGH since 2002. In the past few decades NGS’ gravity work has concentrated on. The cytology or cell biology. . (Gr., . Kytos. -hollow vessel or cell, logos- to discourse) is a biological science which deals with the study of cells from morphological, biochemical, physiological, developmental, . Vojtěch Bystrý. CEITEC Bioinformatics Core Facility. CEITEC research areas. FI MUNI Bioinformatics Seminar. 2. Bioinformatics CF mission . Primary NGS analysis. S. econdary standard NGS analysis. Custom (project specific) analysis. ngs. ) of biopsy specimen. Molecular Cancer Classifier can Determine the Cancer Type, but Not Genetic Alterations in Cancer Cells. Comprehensive Profiling (NGS) Can Determine Genetic Alterations in Cancer Cells, but Can Not Determine the Cancer...