PPT-Cell to cell alignment on GLC structures

24 Nov 2014 CERN Toshi Higo KEK 20141123 CLIC Structure Review 1 Contents Transition from GLCNLC to CLIC Alignment target Alignment mechanism M achining S tackingassembly Bookshelf. Linear-space alignment. Using 2 columns of space, we can compute. for k = 1…M, F(M/2, k), F. r. (M/2, N – k). . PLUS the backpointers. x. 1. …. x. M/2. y. 1. x. M. y. N. x. 1. …. x. M/2+1. All services to be aligned to . neighbourhoods. Where services are too small to align to 17 neighbourhoods then they will align with agreed clustering of neighbourhoods. Deliver improved alignment to neighbourhoods. CS/. BioE. 598. Tandy Warnow. Alignment Error/Accuracy. SP-FN: percentage of homologies in the true alignment that are *not* recovered. SP-FP: percentage of homologies in the estimated alignment that are false. Jia. -Ming Chang, Paolo Di . Tommaso. , and Cedric . Notredame. TCS. : A new multiple sequence alignment reliability measure to estimate alignment accuracy and improve phylogenetic tree . reconstruction, . “. The principle of alignment states that nothing should be placed on the page arbitrarily. Every item should have a visual connection with something else on the page.. ”. Left aligned . Right . aligned. Tandy Warnow. The Department of Computer Science. The University of Texas at Austin. The “Tree of Life”. Avian Phylogenomics Project. G Zhang, . BGI. . Approx. 50 species, whole genomes. 8000+ genes, UCEs. Swarun Kumar. Fadel. . Adib. , . Omid. Aryan, . Shyamnath. . Gollakota. . and Dina Katabi . Major Advances in MIMO. E.g. Interference Alignment. . Significant gains in throughput. Single-Antenna Devices. Kiyomi. . Seiya. . Aperture scan. . B75 : Aperture scan program with new corrector. . Kent Triplet, Alex Waller. . BPM data from B40 to B:HPXXX, B:VPXXX. . Sharon Lackey. . Data taking and offline analysis. with. PASTA. Michael Nute. Austin, TX. June 17, 2016. Agenda. Quick recap of PASTA Algorithm. Run the GUI. Explore GUI options and what they do in terms of PASTA. Run a test alignment. Explore PASTA outputs and diagnostics. BMI 877. Colin Dewey. colin.dewey@wisc.edu. March 14, 2017. Overview. What does it . mean . to . align. sequences?. How do we cast sequence alignment as a . computational problem?. What . algorithms . 4. Plants. Travis Wicks. What are C. 3. /C. 4. Plants?. Different photosynthetic pathways. C. 3. -C. 4. Examples. C. 4. C. 3. Kaupag.com. Warm-season grasses. Scientificamerican.com. Treesdirect.co.uk. &. Dynamic Regulatory Flux Balance Analysis. LEARNING OBJECTIVES. Explain dynamic flux balance analysis.. Describe the strengths and limitations of dynamic flux balance analysis.. Explain dynamic regulatory flux balance analysis.. (California: Northern (Deborah Wolff-Baker) & Southern (Gloria Craig); Great Lakes Chapter (MJ . Favot. ), Georgia (Sheryl McManus), North . Carolina (Triad) (Carroll Spinks); . LOCATION OF EVENT. Jia. -Ming Chang, Paolo Di . Tommaso. , and Cedric . Notredame. TCS. : A new multiple sequence alignment reliability measure to estimate alignment accuracy and improve phylogenetic tree . reconstruction, .