PPT-DeNovo

Author : lindy-dunigan | Published Date : 2016-03-23

Rethinking the Multicore Memory Hierarchy for Disciplined Parallelism Byn Choi Rakesh Komuravelli Hyojin Sung Robert Smolinski Nima Honarmand Sarita V Adve

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DeNovo: Transcript

Rethinking the Multicore Memory Hierarchy for Disciplined Parallelism Byn Choi Rakesh Komuravelli Hyojin Sung Robert Smolinski Nima Honarmand Sarita V Adve Vikram S Adve Nicholas P Carter ChingTsun Chou. Denovo genome Denovo genome outline outline novogenome from contigs from assembled contigs annotation Denovo genome Denovo genome Reads contig Gene Gene Annotation Gene Annotation Forgene †. : Rethinking Hardware for Disciplined Parallelism. Byn Choi, Rakesh Komuravelli, Hyojin Sung, . Rob Bocchino, Sarita Adve, Vikram Adve. Other collaborators:. Languages: Adam Welc, Tatiana Shpeisman, Yang Ni (Intel). nucleotides is essential for . life . processes. nucleotides . are the . activated precursors . of nucleic . acids. As such, they are necessary for the replication of the genome . an . adenine nucleotide, ATP, is . Disciplined Non-Determinism. Hyojin Sung. , . Rakesh. . Komuravelli. , and . Sarita. V. . Adve. Department of Computer Science. University of Illinois . at. Urbana-Champaign. Motivation. Shared memory is de-facto model for multicore SW and HW. genome assembly . and analysis. outline. De novo genome assembly. Gene finding from assembled . contigs. Gene annotation. Denovo. genome assembly. 3. Genome . contig. Reads. Gene finding. To find out coding region on genome sequence. Hardware Cache Coherence and Some Implications. Rakesh Komuravelli. Sarita. . Adve. , . Ching-Tsun. Chou. University of Illinois @ Urbana-Champaign, Intel. denovo@c. s.illinois.edu. Motivation. Today’s shared memory systems are more complex than ever. †. : Rethinking Hardware for Disciplined Parallelism. Byn Choi, Rakesh Komuravelli, Hyojin Sung, . Rob Bocchino, Sarita Adve, Vikram Adve. Other collaborators:. Languages: Adam Welc, Tatiana Shpeisman, Yang Ni (Intel). Hardware Cache Coherence and Some Implications. Rakesh Komuravelli. Sarita. . Adve. , . Ching-Tsun. Chou. University of Illinois @ Urbana-Champaign, Intel. denovo@c. s.illinois.edu. Motivation. Today’s shared memory systems are more complex than ever. Disciplined Non-Determinism. Hyojin Sung. , . Rakesh. . Komuravelli. , and . Sarita. V. . Adve. Department of Computer Science. University of Illinois . at. Urbana-Champaign. Motivation. Shared memory is de-facto model for multicore SW and HW. Genome Assembly Team. Kelley Bullard, Henry Dewhurst, . Kizee. Etienne, . Esha. Jain, . VivekSagar. KR, Benjamin Metcalf, . Raghav. Sharma, Charles . Wigington. , Juliette . Zerick. 454 raw reads. Session ID: CAS4157. October 24. th. . 4:45 pm – 5:30 pm. Park Central - Concordia. Welcome and Introductions. Christina Yue. Quest Oracle Community. Customer Learning Manager. Christina.Yue@QuestOracleCommunity.org. Rethinking . of . the Memory Hierarchy. Sarita. Adve, . Vikram Adve,. Rob Bocchino. , Nicholas Carter, Byn . Choi, . Ching-Tsun. Chou, . Stephen Heumann, . Nima. Honarmand, Rakesh Komuravelli, Maria Kotsifakou, . A Hardware Architect’s Perspective. Sarita. Adve, . Vikram Adve,. Rob Bocchino. , Nicholas Carter, Byn . Choi, . Ching-Tsun. Chou, . Stephen Heumann, . Nima. Honarmand, Rakesh Komuravelli, Maria Kotsifakou, . life . processes. nucleotides . are the . activated precursors . of nucleic . acids. As such, they are necessary for the replication of the genome . an . adenine nucleotide, ATP, is . the universal currency of energy. A guanine .

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