PPT-DeNovo

Author : alexa-scheidler | Published Date : 2016-09-10

Rethinking Hardware for Disciplined Parallelism Byn Choi Rakesh Komuravelli Hyojin Sung Rob Bocchino Sarita Adve Vikram Adve Other collaborators Languages Adam

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Rethinking Hardware for Disciplined Parallelism Byn Choi Rakesh Komuravelli Hyojin Sung Rob Bocchino Sarita Adve Vikram Adve Other collaborators Languages Adam Welc Tatiana Shpeisman Yang Ni Intel. Denovo genome Denovo genome outline outline novogenome from contigs from assembled contigs annotation Denovo genome Denovo genome Reads contig Gene Gene Annotation Gene Annotation Forgene †. : Rethinking Hardware for Disciplined Parallelism. Byn Choi, Rakesh Komuravelli, Hyojin Sung, . Rob Bocchino, Sarita Adve, Vikram Adve. Other collaborators:. Languages: Adam Welc, Tatiana Shpeisman, Yang Ni (Intel). nucleotides is essential for . life . processes. nucleotides . are the . activated precursors . of nucleic . acids. As such, they are necessary for the replication of the genome . an . adenine nucleotide, ATP, is . : Rethinking the Multicore Memory Hierarchy. for Disciplined Parallelism. Byn Choi, Rakesh Komuravelli, . Hyojin Sung. , . Robert Smolinski, . Nima. . Honarmand. , . Sarita. V. Adve, . Vikram. S. Adve, Nicholas P. Carter, Ching-Tsun Chou. Disciplined Non-Determinism. Hyojin Sung. , . Rakesh. . Komuravelli. , and . Sarita. V. . Adve. Department of Computer Science. University of Illinois . at. Urbana-Champaign. Motivation. Shared memory is de-facto model for multicore SW and HW. Hardware Cache Coherence and Some Implications. Rakesh Komuravelli. Sarita. . Adve. , . Ching-Tsun. Chou. University of Illinois @ Urbana-Champaign, Intel. denovo@c. s.illinois.edu. Motivation. Today’s shared memory systems are more complex than ever. Disciplined Non-Determinism. Hyojin Sung. , . Rakesh. . Komuravelli. , and . Sarita. V. . Adve. Department of Computer Science. University of Illinois . at. Urbana-Champaign. Motivation. Shared memory is de-facto model for multicore SW and HW. Session ID: CAS4157. October 24. th. . 4:45 pm – 5:30 pm. Park Central - Concordia. Welcome and Introductions. Christina Yue. Quest Oracle Community. Customer Learning Manager. Christina.Yue@QuestOracleCommunity.org. Rethinking . of . the Memory Hierarchy. Sarita. Adve, . Vikram Adve,. Rob Bocchino. , Nicholas Carter, Byn . Choi, . Ching-Tsun. Chou, . Stephen Heumann, . Nima. Honarmand, Rakesh Komuravelli, Maria Kotsifakou, . A Hardware Architect’s Perspective. Sarita. Adve, . Vikram Adve,. Rob Bocchino. , Nicholas Carter, Byn . Choi, . Ching-Tsun. Chou, . Stephen Heumann, . Nima. Honarmand, Rakesh Komuravelli, Maria Kotsifakou, . GettingStarted 1Install32Supporteddatabases73Paired-endsequencing-97%OTU94Denoising(Illuminaonly)155Single-endsequencing176AnintroductiontothedownstreamanalysiswithRandphyloseq217Computebasicstatistic Multicore . Memory. . Hierarchy for. . Disciplined Parallelism. Byn. Choi. , . Nima. . Honarmand. , . Rakesh Komuravelli. , . Robert . Smolinski. , . Hyojin Sung. , Sarita V. . Adve. , . Vikram. S. . life . processes. nucleotides . are the . activated precursors . of nucleic . acids. As such, they are necessary for the replication of the genome . an . adenine nucleotide, ATP, is . the universal currency of energy. A guanine . WELCOME. CHEMICAL AND BIOLOGICAL TREATMENTS. Chemical and Biological Treatments. Chemical oxidation. Chemical reduction. Biological treatment. Many technologies can be applied “in situ” or “ex situ”..

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