PPT-Epigenetics and DNase- Seq

Author : murphy | Published Date : 2022-06-11

BMICS 776 wwwbiostatwiscedubmi776 Spring 2018 Anthony Gitter gitterbiostatwiscedu These slides excluding thirdparty material are licensed under CC BYNC 40 by

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Epigenetics and DNase- Seq: Transcript

BMICS 776 wwwbiostatwiscedubmi776 Spring 2018 Anthony Gitter gitterbiostatwiscedu These slides excluding thirdparty material are licensed under CC BYNC 40 by Anthony Gitter Mark Craven and Colin Dewey. Kevin Ferriter. Mariah Minder. From Yesterday…. Do you think your brain cell and your blood cell have the same DNA sequence?. Genetics. Every cell contains all of your DNA. Not every cell expresses all of your DNA. -What is epigenetics? -Epigenetics and us -Past, present, and future You Are What Your Mother Ate:What is Epigenetics?Daniel Lieber DNA is the Source of Heritable Information in the Cell organism Crea CpG. Island landscape. Héctor. Corrada Bravo. CMSC702 . Spring . 2013. (many slides courtesy of Rafael Irizarry). Genetics: the alphabet of life. Letters of DNA sequence carry the . information. How is this information read and parsed.. Craig A. . Praul. Co- Director . Genomics Core Facility. Huck Institutes of the Life Sciences. Penn State University. A very short history of DNA sequencing. I started from the conviction that, if different DNA species exhibited . July 13, 2015. Goal of the . course. To be able to effectively design, and interpret genomic studies of gene expression.. We will focus on RNA-seq, but the class will provide a foothold into other functional genomics assays.. . Samudra. K. . Wijeratne. , Ph.D.. Dept. of Nutrition and Health Sciences, UNL. Processes in . Epigenetics. The . study of heritable changes in gene expression or cellular phenotype caused by mechanisms other than changes in the underlying DNA . Joo. ’ Kim. Louisiana State University. What is . Epigenetics. ?. “the study of mitotically and/or . meiotically. heritable changes in gene function that can not be explained . by changes . in DNA sequences” – (Riggs et al. 1996). http://www.knowabouthealth.com/wp-content/uploads/2010/06/mcdonalds_.jpg. http://emilyscarenhealth.wordpress.com/2011/10/04/attention-a-must-read-for-smokers/. Can “. nuture. ” change “nature” ?. Features: . (. i. ) Provides standardised ‘. DeepSEA. score’ for noncoding variants. (ii) Provides info on chromatin feature(s) and cell type(s) to concentrate on. (iii) Identify base-resolution sequence features by . BMI/CS 776 . www.biostat.wisc.edu/bmi776/. Spring 2022. Daifeng. Wang. daifeng.wang@wisc.edu. These slides, excluding third-party material, are licensed under . CC BY-NC 4.0. by Mark Craven, Colin Dewey, Anthony . Epigenetics comprises (hereditary) changes in gene expression without altering the DNA sequence . Epigenetics is a biological subdiscipline that deals with questions of development, heredity, gene regulation and evolution . Vladimir Teif. BS312 – Genome Bioinformatics. Lecture 5. Next generation sequencing analysis. https://micro.magnet.fsu.edu/cells/nucleus/images/chromatinstructurefigure1.jpg. Chromatin basics -- reminder. BMI/CS 776 . www.biostat.wisc.edu/bmi776/. Spring 2019. Colin Dewey. colin.dewey@wisc.edu. These slides, excluding third-party material, are licensed under . CC BY-NC 4.0. by Anthony Gitter, Mark Craven, and Colin Dewey. Jessica . Podnar. Outline. RNA. Quality check of the RNA. Types of RNA used for library prep. Library Prep Methods used in the GSAF. Ligation Based. dUTP. method. Tag-. Seq. RNA, the Starting Material .

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