PPT-Using BLAST to Identify Species from Proteins

Adapted from College Boards Investigation 3 Comparing DNA Sequences to Understand Evolutionary Relationships with BLAST What we know so far We already know that DNA can be used to identify animal species at a genetic level. Surg Cdr Jane Risdall . Royal Navy. Consultant. . Neuroanaesthetist/Intensivist. Senior Lecturer, Academic Dept Military . Anaesthesia. and Critical Care. Visiting Research Fellow, University of Cambridge. in Chemical Lab. Safety News Blog. (for additional information on refrigerator safety see the “Equipment: Refrigerators and Freezers” safety moment). Refrigerator Blast. A . refrigerator door blew off and hit an inner pane of a double-paned window in a chemical lab at the University of South Florida. Yanbin Yin. Fall 2014. 1. http://. www.ncbi.nlm.nih.gov. /books/NBK52640/. 2. Why you do need to run BLAST in command line terminal?. NCBI’s server does not have a database that you want to search. 03/14/2017. 1. Leonardo . Mariño-Ramírez. NCBI, NIH – Bethesda, USA. NCBI Search Services and Tools. Entrez. . integrated literature and molecular databases. Viewers. BLink. . protein similarities. Service Learning. involves . students in community service activities and applies the experience to personal and academic development. . Benefits of . S. ervice Learning. Connect academic subjects to the real word . Adapted from College Board’s “Investigation 3: Comparing DNA Sequences to Understand Evolutionary Relationships with BLAST”. What we know so far.... We already know that DNA can be used to identify animal species at a genetic level. Thermo Fisher / Open Biosystems. Dr. Krishnan K. . Chittur. University of Alabama in Huntsville. Dr. Joseph Ng. University of Alabama in Huntsville. What is BLAST. B.L.A.S.T. stands for . B. asic . L. . Jundi. Wang. School of Computing. CSC691. 09/08/2013. 2. Overview. 1.Introduction of BLAST . Background of BLAST. Programs in BLAST. Function of BLAST. 2.Application of BLAST. Outline. A brief introduction on various kind of BLAST. Different Sequences: introduction of NCBI and FASTA format. Web version BLAST. BLAST on Linux system. An application of BLAST on Bioengineering. Part 2: Comparing Fluorescent Proteins. 2013 Workshop C: Cloning DNA to Make Proteins. Dina N Kovarik, MS, PhD. NWABR. Fluorescent Proteins are Valuable Tools. Locate proteins in the cell. Track the migration of cells. Outline I ntroduction BLAST s earch s teps Step 1: Specifying Sequence of interest Step 2: Selecting BLAST Program Step 3: Selecting a Database Step 4: Selecting Search Parameters and Format Post-Doctoral Fellow. Ochman. Lab. Global . vs. Local Alignments. Global . . The global approach is useful when you are comparing a small group of sequences, but becomes become computationally expensive as the number of sequence in the comparison increases. . online and offline. Wen-Dar Lin. Bioinformatics core, IPMB. wdlin@gate.sinica.edu.tw. Preface. When we are talking about . sequence similarity. , we usually are talking about . local alignments. .. NCBI BLAST is one of the most famous local alignment programs where almost everyone has ever used it.. Team2. 邱冠儒 黃. 尹. 柔 田. 耕. 豪 蕭. 逸. 嫻 謝朝茂 . 莊閔. 傑. 2014/05/12. 1. BLAST. Basic local alignment search tool. Enable to compare query sequence of amino-acid or protein or DNA to database .