PPT-Annotation for D. virilis

Chris Shaffer July 2012 Last update 082018 Annotation Big Picture of annotation and then one practical example This technique may not be the best with other projects eg corn bacteria. Denovo genome Denovo genome outline outline novogenome from contigs from assembled contigs annotation Denovo genome Denovo genome Reads contig Gene Gene Annotation Gene Annotation Forgene Thesis Proposal. Tao Huang. taohuang@cs.indiana.edu. Outline. Introduction. Motivation. Related System Survey. Research Issues. Milestones. Contributions. Introduction. Annotation Definitions. A commentary on an object that: (Cousins et al. 2000). BCB 660. October 20, 2011. From Carson Holt. Annotations. Automated. Ab. initio. (based on genomic sequence alone). Involves comparisons to known proteins (BLAST similarity). Sequence motifs such as start/stop . PropBank. . Outline. Introduction to the project. Basic linguistic concepts. Verb & Argument. Making information explicit. Null arguments. Tasks to be carried out. Timesheets, tips. Creation of Resources. &. Text Coding. Learning Target. I can determine a central idea of a text and how it is conveyed through particular details; provide a summary of the text distinct from personal opinions or judgments. . Triplets to Sentence Fingerprints. Motivation. . Scientific concepts are annotated with controlled vocabulary (CV) terms from ontologies such as Gene Ontology (GO) and Plant Ontology (PO). . Our Arabidopsis specific tool - . 2. n-gram language model. 3. classifier. Studying Humour Features - Bolla, Whelan. Guidelines. define tags and describe how they should be applied. Data. 500 reviews of varying length (>7300 sentences). A Close Reading Strategy for Better Comprehension. Text Annotation by Teachers. What is Text Annotation?. While reading, students mark the pages for . Important information. Text meaning or key details. Authors: Joe Futrelle, Amber York. . @ Woods Hole Oceanographic Institution. Imaging FlowCytobot. (Heidi Sosik et al). HabCam. (Scott . Gallager. et al). SeaBED. (. Hanumat. Singh et al). Phytoplankton . Text Annotation by Teachers. What is Text Annotation?. While reading, students mark the pages for . Important information. Text meaning or key details. Ideas and questions. What About Highlighters?. The Next Generation. Rashmi. Prasad, Bonnie . W. ebber, . A. lan Lee. *. Aravind. Joshi. Outline. Introduction. Discourse Coherence and its annotation. PDTB Basics. PDTB enrichment. Motivation. New relations. Petra Bud. íková, FI MU. CEMI meeting, Plze. ň. , 1. 6. . . 4. . 2014. Formalization. The annotation problem is . defined by a . query image . I. . and a . vocabulary . V. of candidate concepts. Benefit #1 of annotation: . helps you to stay . awake. We all know that sometimes the reading selections can be a tad bit boring right…….. Annotating the text keeps your . brain. . working. . and it keeps you . Omeka. Mikhail Livshits. Install. Download . the plugin at . http://omeka.org/add-ons/plugins/image-annotation. /. Upload folder to /. omeka. /plugins. Configure. Log in to . Omeka. Admin .  Manage Plugins  Configure (next to Image Annotation.