PPT-New variation resources at the UCSC Genome Browser

Brooke Rhead Angie S Hinrichs Timothy R Dreszer Brian J Raney Robert M Kuhn Ann S Zweig Donna Karolchik W James Kent Annotate your variants View gene alleles haplotypes from 1000 Genomes data . analyze . your data with a mouse click. Igor Makunin. i.makunin@uq.edu.au. QAAFI, UQ, April 8, 2015. Research. Computing. Centre. @ UQ. Genomics Virtual Laboratory. Genome scale experiments are relatively cheap and very popular. Genome Alignment in the Human Genome. Jian. Ma. Jian Ma | Sequence Comparison and Genome Alignment | 2015. 1. PowerPoint by Casey . Hanson. Introduction. This goals of the lab are as follows:. Gain experience using BLAST and Genome Browsers by looking at repeat families in the VHL gene.. The Plot. Deepak . Purushotham. Hamid Reza . Hassanzadeh. Haozheng. . Tian. Juliette . Zerick. Lavanya. . Rishishwar. Piyush. . Ranjan. Lu Wang. The Outline. The Need & The Requirement. The Options. Browse genes in their genomic context.. See features in and around specific genes. Investigate genome organization. Search and retrieve information on a gene- and genome-scale. Compare genomes and genome regions. Jeff Barrett. What are the goals of disease genetics?. For a given disease, we would like to:. Predict if someone will get sick, how bad it will be, and what treatment will work.. Test hypotheses about relationships to other diseases and traits.. Santa Cruz . UC Santa Cruz is Located 80 miles south of San Francisco at the edge of the coastal community of Santa Cruz. The campus lies on 2,001 acres of rolling, forested hills overlooking the Pacific ocean and Monterey Bay.. Detecting Variation. In populations or when comparing closely related species, one major objective is to identify variation among the samples. AKA, one of the main goals in genomics is to identify what genomic features make individuals/populations/species different. y = . kx. , where k ≠ 0. . The constant of variation for a direct variation . k. is the coefficient of . x.. Example of direct variation. : The time it takes to hear thunder varies directly with the distance from lightning. (As the distance from lightning increases, so does the time it takes you to hear the thunder!). Bioinformatics. GCBA815/MCGB815/BMI815, Fall 2017. Week-6: Genomics Browsers . (UCSC, IGV and . ExAC. ). Babu . Guda, Ph.D. .. Professor, Genetics, Cell Biology & Anatomy. Director, Bioinformatics and Systems Biology Core. An introduction to web tools, . databases, and NCBI BLAST. Wilson Leung 12/2021. Agenda. GEP annotation project overview. Web databases for . Drosophila. annotation. UCSC Genome Browser. NCBI / BLAST. Matthew L. Speir. 1. , Angie S. Hinrichs. 1. , Maximilian Haeussler. 1. , Brian J. Raney. 1. , Hiram Clawson. 1. , Kate R. Rosenbloom. 1. , Galt P. Barber. 1. ,. Jonathan Casper. 1. , Steve Heitner. 1. BMI/CS 776 . www.biostat.wisc.edu/bmi776/. Spring . 2018. Anthony Gitter. gitter@biostat.wisc.edu. These slides, excluding third-party material, are licensed under . CC BY-NC 4.0. . by Mark Craven, Colin Dewey, and Anthony Gitter. Benjamin Neale, PhD. Boulder Workshop. Content warning: eugenicists. Sick individuals and sick populations Rose 1985. Mendelian. Genetics. Co-dominance. East 1915: Inheritance of Corolla Length in . collection of genome assemblies. Presenter: Hiram Clawson – U.C. Santa Cruz Genomics Institute. hclawson@ucsc.edu. . our work is supported by a number of different grants:. National Human Genome Research Institute U41HG002371.