PPT-Nanopore Sequencing Technology and Tools

Computational Analysis of the Current State Bottlenecks and Future Directions Damla Senol 1 Jeremie Kim 13 Saugata Ghose 1 Can Alkan 2 and Onur Mutlu 31 Nanopore Sequencing. Nanopore. Technologies. Nanopore. Sequencing. Introduction to . nanopore. sensing . A . nanopore. : a . nano. -scale hole. . Biological: a pore-forming protein (e.g. . α. -. Hemolysin. ) in a membrane (e.g. lipid . Academy for teaching and learning excellence. Question. When walking around campus, what do you notice about students?. Agenda. Background overview. Using technology to motivate:. Illustrating subject relevance. Nanopore. Sequencing of Transmissible . Tetracyline. Plasmids Captured without Cultivation from Stream Sediment Reveals Linked Genes Encoding Resistance to Multiple Human Clinical Antibiotics . J. B. Herrick*, . (and) Barely Keeping Up. Joshua Johnson – Spring 2014. Why do I use Technology to Teach First Year Composition?. Ehrmann and Chickering (1996) “Implementing the Seven . Principles: Technology . as . (very) large datasets. 5/23/17. Goals for the course. Understand how next-generation sequencing technologies are used in biomedical research. Learn how to use publicly available databases/websites to find specific information about genes. (very) large datasets. 5/24/18. Goals for the course. Understand how next-generation sequencing technologies are used in biomedical research. Learn how to use publicly available databases/websites to find specific information about genes. Dr. Jennifer Weller. May 2016. Sequencing Technologies. 5/20/2016. Dr. Weller B3 Olympic HS. 1. Topics. Fundamentals of ‘Sequencing by Synthesis’. Sequencing Technologies or ‘Platforms’. Sanger/Capillary sequencing. :. Computational Analysis of the Current State, Bottlenecks and Future Directions. Damla Senol. 1. , Jeremie . Kim. 1,3. , . Saugata Ghose. 1. , Can Alkan. 2. and Onur Mutlu. 3,1. 1 . Department of Electrical and Computer Engineering, Carnegie Mellon University, Pittsburgh, PA, USA. Computational Analysis of the Current State, Bottlenecks and Future Directions. Damla Senol Cali. 1. , Jeremie S. Kim. 1,3. , Saugata Ghose. 1. , Can Alkan. 2. and Onur Mutlu. 3,1. Nanopore Sequencing. Nanopore. . Sequencing. Outline. Nanopore. Sequencing Technology. Raw Data. Transformations and Raw Data Processing. Toward Producing a . Basecaller. Future Directions. What is . Nanopore. Sequencing?. Moon J, Jang Y, Kim N, Park W, Park K, Lee S, et al. Diagnosis of Haemophilus influenzae Pneumonia by Nanopore 16S Amplicon Sequencing of Sputum. Emerg Infect Dis. 2018;24(10):1944-1946. https://doi.org/10.3201/eid2410.180234. and Accurate Assembly Polishing Algorithm. Can Firtina. 1. , Jeremie S. Kim. 1,2. , Mohammed Alser. 1. , . Damla. . Senol. Cali. 2. , A. . Ercument. Cicek. 3. ,. Can Alkan. 3. , and . Onur. Mutlu. Using a genetic condition as an examples, describe a sequencing technology and how it works to a non-specialist healthcare professional. . Describe a DNA sequencing technology which we may expect to see being used in genomics laboratories in the future. . 14/11, ore 14-16, edificio Q. 20/11, ore 11-13. , . edificio Q. 21/11, ore 14-16, . edificio . Q. 22/11, ore 9-11, edificio Q. 27/11, ore 11-13, aula Z. 29/11, ore 9-11, aula Z. CALENDARIO DELLE LEZIONI - DICEMBRE.