PPT-Searching for Transcription Start Sites in

Drosophila 012019 Wilson Leung Outline Transcription start sites TSS annotation goals Promoter architecture in D melanogaster Find the initial transcribed exon in the target species Annotate putative transcription start sites. and Its Regulation. January . 21 . –Mechanism of Transcription Initiation. January . 23– Regulation of of Transcription Initiation. January . 27–Mechanism and regulation of Transcription Elongation. Understanding:. Gene expression is regulated by proteins that bind to specific base sequences in DNA . The environment of a cell and of an organism has an impact on gene expression. Nucleosomes help to regulate transcription in eukaryotes. C483 Spring 2013. 1. RNA Polymerase. Polymerizes RNA in a 3’. 5’ direction.. Has 3’5’ . exonuclease. activity. Has 5’3’ . exonuclease. activity. Catalyzes a reaction driven by pyrophosphate hydrolysis. RNA Processing, and Transcriptional Regulation. Structure of RNA. Major Classes of RNA. Transcription in Prokaryotes. Transcription in Eukaryotes. Post-transcriptional Processing of Eukaryotic mRNA. Transcriptional Regulation in Prokaryotes:. Learning Objectives. Learn what a ‘transcription factor’ is.. Learn how oestrogen affects gene transcription.. Learn what siRNA is and how it affects gene expression.. Recap of 15.1. That the cells in our bodies are highly . BNFO 602/691. Biological Sequence Analysis. Mark Reimers, VIPBG. Why TFBS?. Protein transcription factors were among the first gene regulators identified. Many TFBS have distinct sequences, which were suitable for bioinformatics analysis. Topic 2.6 & 7.2. Understandings:. Transcription is the synthesis of mRNA copied from the DNA base sequences by RNA polymerase. . Gene expression is regulated by proteins that bind to specific base sequences in DNA.. Structure. Central Dogma. Template Strand. Coding Strand. RNA Functions. RNA Building Blocks. Structure. Eukaryotic Process. RNA Polymerase. Subunits (Prokaryotes). α (2). β. β’. ω. σ. Transcription. Structure of RNA. Major Classes of RNA. Transcription in Prokaryotes. Transcription in Eukaryotes. Post-transcriptional Processing of Eukaryotic mRNA. Transcriptional Regulation in Prokaryotes:. the Lac Operon as an example. Dr. Vladimir Teif. BS222 – Genome Science Lecture 4. Module structure. Genomes, sequencing projects and genomic databases (VT) (Oct 9, 2018). Sequencing technologies (VT) (Oct 11, 2018). Genome architecture I: protein coding genes (VT) (Oct 16, 2018). . SYFTET. Göteborgs universitet ska skapa en modern, lättanvänd och . effektiv webbmiljö med fokus på användarnas förväntningar.. 1. ETT UNIVERSITET – EN GEMENSAM WEBB. Innehåll som är intressant för de prioriterade målgrupperna samlas på ett ställe till exempel:. 4. th. December 2013. 1. Understanding the Human Genome: Lessons from the ENCODE project. Austen Ganley. INMS. Glossary. Genome. Genes. DNA/RNA. Protein. Cell. Transcription. Chromatin. Histones. Nucleosomes. A eukaryotic transcription initiation complex consists of RNA polymerase II, . five. general transcription factors (GTFs), and a 20-subunit complex called Mediator (or . Srb. /Med). The CTD of RNA polymerase II anchors Mediator to the polymerase. Mediator allows RNA polymerase II to communicate with transcriptional . .. The length of the transcription bubble is about 12 to 14 . bp. , but the length of the RNA–DNA hybrid within the bubble is only 8 to 9 . bp. . As the enzyme moves along the template, the DNA duplex reforms.