PPT-Figure 2 Figure 2. . Maximum likelihood phylogenetic trees of the small (S; panel A) and

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Razuri H Tokarz R Ghersi BM SalmonMulanovich G Guezala M Albujar C et al Andes Hantavirus Variant in Rodents Southern Amazon Basin Peru Emerg Infect Dis 2014202257260

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Figure 2 Figure 2. . Maximum likelihood phylogenetic trees of the small (S; panel A) and: Transcript

Razuri H Tokarz R Ghersi BM SalmonMulanovich G Guezala M Albujar C et al Andes Hantavirus Variant in Rodents Southern Amazon Basin Peru Emerg Infect Dis 2014202257260 httpsdoiorg103201eid2002131418. Molecular phylogenetic methods 4. 11-10-2011. Maximum likelihood methods. So far we have only considered a single . site (configuration). . The likelihood for all sites is the product of the likelihoods for each site if all the sites evolve independently. . Methods. Dr Laura Emery . Laura.Emery@ebi.ac.uk. www.ebi.ac.uk. /training. Objectives. After this . tutorial you . should be able to. …. Discuss . a range of . methods for . phylogenetic . inference, their advantages. Sobolev I, Sharshov K, Dubovitskiy N, Kurskaya O, Alekseev A, Leonov S, et al. Highly Pathogenic Avian Influenza A(H5N8) Virus Clade 2.3.4.4b, Western Siberia, Russia, 2020. Emerg Infect Dis. 2021;27(8):2224-2227. https://doi.org/10.3201/eid2708.204969. Negredo A, Sánchez-Arroyo R, Díez-Fuertes F, de Ory F, Budiño M, Vázquez A, et al. Fatal Case of Crimean-Congo Hemorrhagic Fever Caused by Reassortant Virus, Spain, 2018. Emerg Infect Dis. 2021;27(4):1211-1215. https://doi.org/10.3201/eid2704.203462. Le Gal F, Gault E, Ripault M, Serpaggi J, Trinchet J, Gordien E, et al. Eighth Major Clade for Hepatitis Delta Virus. Emerg Infect Dis. 2006;12(9):1447-1450. https://doi.org/10.3201/eid1209.060112. Brown MA, Troyer JL, Pecon-Slattery J, Roelke ME, O’Brien SJ. Genetics and Pathogenesis of Feline Infectious Peritonitis Virus. Emerg Infect Dis. 2009;15(9):1445-1452. https://doi.org/10.3201/eid1509.081573. Gabriel M, Resch C, Günther S, Schmidt-Chanasit J. Toscana Virus Infection Imported from Elba into Switzerland. Emerg Infect Dis. 2010;16(6):1034-1036. https://doi.org/10.3201/eid1606.091763. Assis FL, Borges IA, Mesquita VS, Ferreira PC, Trindade GS, Kroon EG, et al. Vaccinia Virus in Household Environment during Bovine Vaccinia Outbreak, Brazil. Emerg Infect Dis. 2013;19(12):2045-2047. https://doi.org/10.3201/eid1912.120937. Takada N, Fujita H, Kawabata H, Takajo I, Sakata A, Takano A, et al. Spotted Fever Group Rickettsia sp. Closely Related to R. japonica, Thailand. Emerg Infect Dis. 2009;15(4):610-611. https://doi.org/10.3201/eid1504.071271. Kim K, Yi J, Oh W, Kim N, Choi S, Choe P, et al. Human Granulocytic Anaplasmosis, South Korea, 2013. Emerg Infect Dis. 2014;20(10):1708-1711. https://doi.org/10.3201/eid2010.131680. Keawcharoen J, Oraveerakul K, Kuiken T, Fouchier R, Amonsin A, Payungporn S, et al. Avian Influenza H5N1 in Tigers and Leopards. Emerg Infect Dis. 2004;10(12):2189-2191. https://doi.org/10.3201/eid1012.040759. Smits SL, Zijlstra E, van Hellemond JJ, Schapendonk C, Bodewes R, Schürch AC, et al. Novel Cyclovirus in Human Cerebrospinal Fluid, Malawi, 2010–2011. Emerg Infect Dis. 2013;19(9):1511-1513. https://doi.org/10.3201/eid1909.130404. Terminology. phylogeny . evolutionary history of a species or group of species. systematics. . classifying and determining evolutionary relationships of organisms . taxonomy . classifying and naming of organisms. Klempa B, Fichet-Calvet E, Lecompte E, Auste B, Aniskin V, Meisel H, et al. Hantavirus in African Wood Mouse, Guinea. Emerg Infect Dis. 2006;12(5):838-840. https://doi.org/10.3201/eid1205.051487.

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Part one An Introduction to Phylogenetic

Figure Figure. Maximum-likelihood phylogenetic tree of the hemagglutinin segment of HPAI

PPT-Figure 2 Figure 2. . Maximum likelihood phylogenetic trees of the small (S; panel A) and

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Figure 2 Figure 2. . Maximum likelihood phylogenetic trees of the small (S; panel A) and: Transcript

Part one An Introduction to Phylogenetic

Figure Figure. Maximum-likelihood phylogenetic tree of the hemagglutinin segment of HPAI

Figure 2 Figure 2. Bayesian phylogenetic trees showing genetic relationships among Crimean-Congo

Figure 2 Figure 2. Maximum likelihood trees inferred from hepatitis delta virus

Figure 4 Figure 4. Maximum-likelihood (ML) phylogenetic tree of unique sequences

Figure Figure. Bayesian phylogenetic tree of Toscana virus (TOSV) and Sandfly

Figure Figure. . Phylogenetic trees based on orthopoxvirus nucleotide sequences, including

Figure Figure. Phylogenetic analysis based on ompA gene (A) and rickettsial genus–specif

Figure 1 Figure 1. Phylogenetic trees for partial 16S rRNA gene sequences of an Anaplasma

Figure 2 Figure 2. Phylogenetic comparison of zoo felid isolates with other H5N1

Figure Figure. . Cyclovirus genome organization and phylogenetic analysis of translated

Phylogeny Constructing Phylogenetic Trees

Figure Figure. Maximum likelihood phylogenetic tree of hantaviruses showing the

PPT-Figure 2 Figure 2. . Maximum likelihood phylogenetic trees of the small (S; panel A) and

Presentation Embed Code

Download Presentation

Figure 2 Figure 2. . Maximum likelihood phylogenetic trees of the small (S; panel A) and: Transcript

Part one An Introduction to Phylogenetic

Figure Figure. Maximum-likelihood phylogenetic tree of the hemagglutinin segment of HPAI

Figure 2 Figure 2. Bayesian phylogenetic trees showing genetic relationships among Crimean-Congo

Figure 2 Figure 2.&nbsp;Maximum likelihood trees inferred from hepatitis delta virus

Figure 4 Figure 4.&nbsp;Maximum-likelihood (ML) phylogenetic tree of unique sequences

Figure Figure.&nbsp;Bayesian phylogenetic tree of Toscana virus (TOSV) and Sandfly

Figure Figure. . Phylogenetic trees based on orthopoxvirus nucleotide sequences, including

Figure Figure.&nbsp;Phylogenetic analysis based on ompA gene (A) and rickettsial genus–specif

Figure 1 Figure 1. Phylogenetic trees for partial 16S rRNA gene sequences of an Anaplasma

Figure 2 Figure 2.&nbsp;Phylogenetic comparison of zoo felid isolates with other H5N1

Figure Figure. . Cyclovirus genome organization and phylogenetic analysis of translated

Phylogeny Constructing Phylogenetic Trees

Figure Figure.&nbsp;Maximum likelihood phylogenetic tree of hantaviruses showing the

Figure 2 Figure 2. Maximum likelihood trees inferred from hepatitis delta virus

Figure 4 Figure 4. Maximum-likelihood (ML) phylogenetic tree of unique sequences

Figure Figure. Bayesian phylogenetic tree of Toscana virus (TOSV) and Sandfly

Figure Figure. Phylogenetic analysis based on ompA gene (A) and rickettsial genus–specif

Figure 2 Figure 2. Phylogenetic comparison of zoo felid isolates with other H5N1

Figure Figure. Maximum likelihood phylogenetic tree of hantaviruses showing the