PPT-Dissecting plant genomes using

PLAZA 25 Michiel Van Bel 12 Sebastian Proost 12 Elisabeth Wischnitzki 12 Sara Mohavedi 12 Christopher Scheerlinck 3 Yves Van de Peer 12 and Klaas Vandepoele 12 . & . Genome evolution. Genomes and Genome Evolution - BIOL 4301/6301. What to expect and some suggestions.. I . like think . of . myself as . fair but reasonably tough. I want people to do well but I’m not willing to compromise on the material or ethical guidelines to make it happen.. from Biological . Problem to . Combinatorial Algorithms. (and back). Pavel Pevzner. Department of Computer . Science,. . University . of California at San Diego. What is the evolutionary scenario for transforming one genome into the other?. How to identify circularly permuted genomes, physical ends, 3’ overhangs, terminal repeats, and nicks.. Circularly Permuted Genomes. Some phages have circularly permuted genomes. This means a linear concatamer of phage DNA is synthesized, used to fill a phage head, then cut when the head is full. Generally, one head will fit more than 100% of a genome, say, 103-110%. This ensures that wherever the DNA is cut, at least one working copy of each gene is present.. DNA. Double helix. Bases. Sequence. Gene . Key words. Genome . Genome sequencing. Species . Human Genome Project. DNA. is found in the nucleus of a cell. It is a long molecule that carries a set of codes to make you unique.. George Varghese (MSR, UCSD). ( with V. . Bafna. , C. . Kozanitis. , UCSD). Interpreting the Genome. Technology Review . 2009. New technologies will soon make it possible to sequence thousands of human genomes. Now comes the hard part: understanding all the data.. 6.1 Introduction to Genomics. 6.2 Sequencing Genomes. 6.3 Bioinformatics and Annotating Genomes. 6.1 Introduction to Genomics. Genome. Entire complement of genetic information. Includes genes, regulatory sequences, and noncoding DNA. George Varghese (MSR, UCSD). ( with V. . Bafna. , C. . Kozanitis. , UCSD). Interpreting the Genome. Technology Review . 2009. New technologies will soon make it possible to sequence thousands of human genomes. Now comes the hard part: understanding all the data.. Dr. Vladimir Teif. BS222 – Genome Science Lecture 1. Welcome to BS222 Genome Science!. Meet your lecturers. Vladimir Teif. (module supervisor). Leonard . Schalkwyk. Patrick . Varga-Weisz. Jordi . Paps. What you need to know:. The major goals of the Human Genome Project.. How . prokaryotic genomes compare to eukaryotic genomes. .. Applications of bioinformatics to medicine, evolution, and health.. The activity and role of transposable elements and . 3. Tim . Beissinger. (Göttingen). Martin Bohn (UIUC). Ed Buckler (ARS). Darwin Campbell (ISU). Alejandro Castro (UW). Ignacio . Ciampitti. (KSU). Liang Dong (ISU). Jode. Edwards (ARS). David . Ertl. Bas E. Dutilh. March 4. th. 2013. Protein function. Phenotypic. . function. E.g. . apoptosis. GO: . Biological. . process. Cellular. . function. E.g. . ribosome. GO: . Cellular. component. Molecular. Circularly Permuted Genomes. Some phages have circularly permuted genomes. This means a linear concatamer of phage DNA is synthesized, used to fill a phage head, then cut when the head is full. Generally, one head will fit more than 100% of a genome, say, 103-110%. This ensures that wherever the DNA is cut, at least one working copy of each gene is present.. Genomic Medicine. Update Session. Provided by Catherine Carpenter-Clawson Programme Manager, WE . GMC with Tracie Miles Genomics Champion RUH, Bath.. Courtesy . of . Genomics England. The Human Genome Project. Campadelli-Fiume G, Mirandola P, Menotti L. Human Herpesvirus 6: An Emerging Pathogen. Emerg Infect Dis. 1999;5(3):353-366. https://doi.org/10.3201/eid0503.990306.