PPT-NGS data processing

Author : tawny-fly | Published Date : 2016-06-10

Bioinformatics tips tools of the trade and pipeline writing Na Cai 4 th year DPhil in Clinical Medicine Supervisor Jonathan Flint Example projects CONVERGE 17x

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NGS data processing: Transcript

Bioinformatics tips tools of the trade and pipeline writing Na Cai 4 th year DPhil in Clinical Medicine Supervisor Jonathan Flint Example projects CONVERGE 17x whole genome sequencing in . Tim Morris (Durham University). a. nd. The CANARY team. CANARY. Contents. Tomography in Adaptive Optics. Multiple Object Adaptive Optics. CANARY Status and Results. Impact on future AO systems. Adaptive optics. Jenny . Wu. Outline. Goals : Practical guide to NGS data processing. Bioinformatics in NGS data analysis. Basics: terminology, data formats, general workflow etc.. Data Analysis Pipeline. Sequence QC and preprocessing. Jenny Wu. UCI Genomics High Throughput Facility. Outline. Goals : Practical guide to NGS data processing. Bioinformatics in NGS data analysis. Basics: terminology, data file formats, general workflow . Eric T. Weimer, PhD, D(ABMLI). CONFLICT OF . INTEREST. I . have financial relationship(s) with: . Advisory Board. , Illumina. NGS Implementation at UNC. Received ASHI accreditation in . August . 2015. Eric T. Weimer, Ph.D., D(ABMLI). Assistant Professor, Pathology and Laboratory Medicine. Associate Director, Clinical Flow Cytometry, HLA, and Immunology . Laboratories. CONFLICT OF . INTEREST. I . have financial relationship(s) with: . ). . Institute. of . Hematology. . and . Medical. . Oncology. . “L. e A. Seragnoli” . Bologna . Italy. Giovanni Martinelli. as EHA representative . ECCO-ESMO-ESTRO Congress. Amsterdam . 29th September. Vladimir Teif. BS222 – Genome Science Lecture 8. Module structure. Genomes, sequencing projects and genomic databases (VT) (Oct 9, 2018). Sequencing technologies (VT) (Oct 11, 2018). Genome architecture I: protein coding genes (VT) (Oct 16, 2018). Departiment. of Diagnostics and Laboratory Medicine. A. . Gemelli. – School of Medicine, Rome. Next. generation . techniques. for . biomarker. . identification. I. ssues regarding . BRCA1/2. Sanger . Vladimir Teif. BS312 – Genome Bioinformatics. Lecture 5. Next generation sequencing analysis. https://micro.magnet.fsu.edu/cells/nucleus/images/chromatinstructurefigure1.jpg. Chromatin basics -- reminder. Sequencing. . Paolo Aretini . Senior . Researcher. Fondazione Pisana per la Scienza. School on . Scientific. Data Analysis,. 25-28 . November. 2019. Scuola Normale Superiore . Outline. Introduction. 2. nd. August 2019. Sequencing history. Current sequencing approaches. File formats. Quality assessment. Read trimming. DAG workflows. The Sequence Read Archive. Outline. Descriptive text. Example commands – black monospaced text: . Vojtěch Bystrý. 29. . October. 2018. Goals of the presentation. O. verview. of NGS bioinformatics . NGS . bioinformatics < Sequence analysis < Bioinformatics. W. hat to think about when you . Vojtěch Bystrý. CEITEC Bioinformatics Core Facility. CEITEC research areas. FI MUNI Bioinformatics Seminar. 2. Bioinformatics CF mission . Primary NGS analysis. S. econdary standard NGS analysis. Custom (project specific) analysis. in the Era of Precision Medicine. JSCO 50. th. Annual Meeting. Yokohama, Japan. October 27, 2012. Mark E. Sobel MD, PhD. Executive Officer. American Society for Investigative Pathology. mesobel@asip.org.

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